Wall clock time and date at job start Mon Mar 30 2020 01:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.87025 * 2 1 4 4 O 1.43748 * 109.87802 * 121.15891 * 2 1 3 5 5 C 1.44382 * 106.97163 * 145.93675 * 4 2 1 6 6 C 1.55227 * 103.57038 * 320.01454 * 5 4 2 7 7 C 1.54098 * 109.87917 * 238.99391 * 2 1 3 8 8 H 1.08996 * 110.48806 * 119.74077 * 7 2 1 9 9 C 1.50700 * 110.49062 * 357.21974 * 7 2 1 10 10 O 1.21434 * 120.00300 * 268.81472 * 9 7 2 11 11 C 1.41023 * 119.99690 * 88.80882 * 9 7 2 12 12 H 1.08000 * 119.99979 * 0.02562 * 11 9 7 13 13 C 1.40461 * 120.00079 * 179.72860 * 11 9 7 14 14 N 1.30522 * 119.99777 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 120.00318 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.46695 * 60.00052 * 15 13 11 17 17 H 1.48496 * 109.47206 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47147 * 300.00318 * 15 13 11 19 19 H 1.08999 * 109.47232 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47064 * 299.99312 * 1 2 3 21 21 H 1.09000 * 109.46951 * 59.99811 * 1 2 3 22 22 H 1.09003 * 110.61626 * 78.44643 * 5 4 2 23 23 H 1.09001 * 110.61858 * 201.28214 * 5 4 2 24 24 H 1.09003 * 110.89195 * 278.75247 * 6 5 4 25 25 H 1.08989 * 111.02302 * 155.07466 * 6 5 4 26 26 H 0.97004 * 120.00210 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 1.1568 5 6 3.2379 -1.3652 0.7629 6 6 2.9217 -1.8905 -0.6631 7 6 2.0540 -0.7465 -1.2421 8 1 2.6600 -0.0827 -1.8586 9 6 0.9074 -1.3077 -2.0430 10 8 0.5075 -2.4332 -1.8242 11 6 0.2988 -0.5257 -3.0464 12 1 0.6548 0.4752 -3.2411 13 6 -0.7661 -1.0508 -3.7968 14 7 -1.1921 -2.2627 -3.5657 15 14 -1.5728 -0.0147 -5.1255 16 1 -0.5610 0.3541 -6.1479 17 1 -2.6628 -0.7931 -5.7666 18 1 -2.1352 1.2183 -4.5184 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 4.0685 -0.6598 0.7348 23 1 3.4600 -2.1910 1.4388 24 1 2.3573 -2.8220 -0.6179 25 1 3.8348 -2.0184 -1.2441 26 1 -1.9278 -2.6252 -4.0836 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086757945.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:13 Heat of formation + Delta-G solvation = -97.985695 kcal Electronic energy + Delta-G solvation = -11603.763572 eV Core-core repulsion = 9454.151060 eV Total energy + Delta-G solvation = -2149.612512 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.12725 -36.25115 -32.68818 -31.36318 -30.63683 -26.99714 -25.23449 -21.63981 -21.34181 -18.48336 -16.39185 -15.75012 -15.33955 -14.91974 -14.34840 -13.56052 -12.95101 -12.64509 -11.87760 -11.75306 -11.42320 -11.18895 -10.93034 -10.77935 -10.45875 -10.40373 -10.17328 -9.95949 -9.78640 -9.06973 -8.88885 -7.36795 -6.23323 -4.88941 3.06156 3.13096 3.14833 4.02426 4.20098 4.54694 5.25325 5.49884 5.61017 5.71351 5.84989 5.95774 6.17288 6.26752 6.32375 6.56491 6.75905 6.78443 6.85106 7.02134 7.24713 7.27684 7.60886 8.07621 8.82865 8.89314 10.35075 10.58195 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.068657 B = 0.012971 C = 0.012290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.728411 B = 2158.180487 C = 2277.809755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.095 3.905 3 H 0.055 0.945 4 O -0.382 6.382 5 C 0.048 3.952 6 C -0.144 4.144 7 C -0.164 4.164 8 H 0.075 0.925 9 C 0.383 3.617 10 O -0.539 6.539 11 C -0.535 4.535 12 H 0.067 0.933 13 C 0.084 3.916 14 N -0.740 5.740 15 Si 0.902 3.098 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.265 1.265 19 H 0.071 0.929 20 H 0.041 0.959 21 H 0.085 0.915 22 H 0.048 0.952 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.075 4.244 2.227 6.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.038 3.962 3 H 0.073 0.927 4 O -0.302 6.302 5 C -0.029 4.029 6 C -0.181 4.181 7 C -0.184 4.184 8 H 0.093 0.907 9 C 0.276 3.724 10 O -0.427 6.427 11 C -0.566 4.566 12 H 0.086 0.914 13 C -0.140 4.140 14 N -0.369 5.369 15 Si 0.727 3.273 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.190 1.190 19 H 0.090 0.910 20 H 0.060 0.940 21 H 0.103 0.897 22 H 0.067 0.933 23 H 0.100 0.900 24 H 0.110 0.890 25 H 0.084 0.916 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.685 3.538 2.534 5.702 hybrid contribution -0.107 0.755 -0.949 1.218 sum 3.578 4.292 1.585 5.809 Atomic orbital electron populations 1.22024 0.93399 1.03969 1.01442 1.22482 0.95723 0.93943 0.84098 0.92676 1.88801 1.39535 1.67820 1.34053 1.23489 0.87525 0.95606 0.96242 1.23102 0.99372 1.00979 0.94692 1.23204 1.00339 0.97242 0.97571 0.90698 1.19107 0.82496 0.87669 0.83081 1.90391 1.63427 1.20858 1.68069 1.20748 1.15902 1.01928 1.18051 0.91430 1.25992 0.96226 0.94586 0.97156 1.69939 1.19839 1.13925 1.33155 0.86504 0.79146 0.80636 0.81061 1.19054 1.20368 1.18952 0.91007 0.94041 0.89657 0.93348 0.89968 0.89028 0.91643 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.41 37.16 0.31 -3.00 15 2 C 0.09 2.00 4.05 -26.16 -0.11 1.89 15 3 H 0.06 1.04 8.14 -51.93 -0.42 0.61 15 4 O -0.38 -8.02 11.19 -35.23 -0.39 -8.42 15 5 C 0.05 0.85 7.72 38.34 0.30 1.15 15 6 C -0.14 -2.92 6.66 -24.59 -0.16 -3.09 15 7 C -0.16 -3.68 3.31 -90.24 -0.30 -3.98 15 8 H 0.07 1.55 8.13 -51.93 -0.42 1.13 15 9 C 0.38 10.46 4.10 -33.25 -0.14 10.32 15 10 O -0.54 -16.75 13.65 5.42 0.07 -16.68 15 11 C -0.53 -14.46 7.92 -37.69 -0.30 -14.76 15 12 H 0.07 1.69 7.85 -52.49 -0.41 1.28 15 13 C 0.08 2.23 5.50 -17.27 -0.10 2.14 15 14 N -0.74 -21.19 11.72 55.57 0.65 -20.54 15 15 Si 0.90 19.26 29.56 -169.99 -5.03 14.23 15 16 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 17 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15 18 H -0.26 -5.50 7.11 56.52 0.40 -5.10 15 19 H 0.07 1.81 7.04 -51.93 -0.37 1.44 15 20 H 0.04 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.08 1.90 6.64 -51.93 -0.34 1.56 15 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 23 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 24 H 0.09 2.12 6.84 -51.93 -0.36 1.76 15 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 26 H 0.27 7.07 8.29 -40.82 -0.34 6.73 15 LS Contribution 220.64 15.07 3.33 3.33 Total: -1.00 -31.24 220.64 -5.01 -36.25 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -3.15 Total: 1.15 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -0.49 Total: -9.32 kcal Atomic # 7 Polarization: -21.19 SS G_CDS: 0.65 Total: -20.54 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.32 Total: -25.10 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -31.24 -5.01 -36.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086757945.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.736 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds