Wall clock time and date at job start Mon Mar 30 2020 01:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.87025 * 2 1 4 4 O 1.43748 * 109.87802 * 121.15891 * 2 1 3 5 5 C 1.44382 * 106.97163 * 145.93675 * 4 2 1 6 6 C 1.55227 * 103.57038 * 320.01454 * 5 4 2 7 7 C 1.54098 * 109.87917 * 238.99391 * 2 1 3 8 8 H 1.08996 * 110.48806 * 119.74077 * 7 2 1 9 9 C 1.50700 * 110.49062 * 357.21974 * 7 2 1 10 10 O 1.21434 * 120.00300 * 268.81472 * 9 7 2 11 11 C 1.41023 * 119.99690 * 88.80882 * 9 7 2 12 12 H 1.08000 * 119.99979 * 0.02562 * 11 9 7 13 13 C 1.40461 * 120.00079 * 179.72860 * 11 9 7 14 14 N 1.30522 * 119.99777 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 120.00318 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.46695 * 60.00052 * 15 13 11 17 17 H 1.48496 * 109.47206 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47147 * 300.00318 * 15 13 11 19 19 H 1.08999 * 109.47232 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47064 * 299.99312 * 1 2 3 21 21 H 1.09000 * 109.46951 * 59.99811 * 1 2 3 22 22 H 1.09003 * 110.61626 * 78.44643 * 5 4 2 23 23 H 1.09001 * 110.61858 * 201.28214 * 5 4 2 24 24 H 1.09003 * 110.89195 * 278.75247 * 6 5 4 25 25 H 1.08989 * 111.02302 * 155.07466 * 6 5 4 26 26 H 0.97004 * 120.00210 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 1.1568 5 6 3.2379 -1.3652 0.7629 6 6 2.9217 -1.8905 -0.6631 7 6 2.0540 -0.7465 -1.2421 8 1 2.6600 -0.0827 -1.8586 9 6 0.9074 -1.3077 -2.0430 10 8 0.5075 -2.4332 -1.8242 11 6 0.2988 -0.5257 -3.0464 12 1 0.6548 0.4752 -3.2411 13 6 -0.7661 -1.0508 -3.7968 14 7 -1.1921 -2.2627 -3.5657 15 14 -1.5728 -0.0147 -5.1255 16 1 -0.5610 0.3541 -6.1479 17 1 -2.6628 -0.7931 -5.7666 18 1 -2.1352 1.2183 -4.5184 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 4.0685 -0.6598 0.7348 23 1 3.4600 -2.1910 1.4388 24 1 2.3573 -2.8220 -0.6179 25 1 3.8348 -2.0184 -1.2441 26 1 -1.9278 -2.6252 -4.0836 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086757945.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:13 Heat of formation + Delta-G solvation = -119.732740 kcal Electronic energy + Delta-G solvation = -11604.706595 eV Core-core repulsion = 9454.151060 eV Total energy + Delta-G solvation = -2150.555534 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.82752 -38.23368 -34.75118 -33.16099 -32.25547 -29.04728 -26.92635 -23.48101 -22.94037 -20.35045 -18.39244 -17.43922 -17.16450 -16.54126 -16.01103 -15.33384 -14.72833 -14.63579 -13.65626 -13.44474 -13.21085 -12.92604 -12.68944 -12.60085 -12.33906 -12.06902 -11.93111 -11.65353 -11.51906 -10.93089 -10.60312 -9.46415 -8.25714 -7.03708 1.37704 1.38777 1.52650 2.21200 2.22235 2.99893 3.35954 3.87573 3.95773 4.16914 4.23260 4.40230 4.56208 4.70331 4.78704 4.85851 4.97584 5.10169 5.14813 5.22689 5.32947 5.46081 6.00918 6.04508 6.76286 6.86256 8.32622 8.55899 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.068657 B = 0.012971 C = 0.012290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.728411 B = 2158.180487 C = 2277.809755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.097 3.903 3 H 0.091 0.909 4 O -0.401 6.401 5 C 0.052 3.948 6 C -0.145 4.145 7 C -0.168 4.168 8 H 0.096 0.904 9 C 0.365 3.635 10 O -0.591 6.591 11 C -0.558 4.558 12 H 0.086 0.914 13 C 0.028 3.972 14 N -0.791 5.791 15 Si 0.987 3.013 16 H -0.253 1.253 17 H -0.273 1.273 18 H -0.252 1.252 19 H 0.025 0.975 20 H 0.067 0.933 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.102 0.898 24 H 0.051 0.949 25 H 0.090 0.910 26 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.013 6.356 1.938 8.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.040 3.960 3 H 0.108 0.892 4 O -0.321 6.321 5 C -0.023 4.023 6 C -0.183 4.183 7 C -0.187 4.187 8 H 0.114 0.886 9 C 0.262 3.738 10 O -0.484 6.484 11 C -0.589 4.589 12 H 0.104 0.896 13 C -0.191 4.191 14 N -0.420 5.420 15 Si 0.806 3.194 16 H -0.177 1.177 17 H -0.198 1.198 18 H -0.176 1.176 19 H 0.045 0.955 20 H 0.086 0.914 21 H 0.095 0.905 22 H 0.103 0.897 23 H 0.120 0.880 24 H 0.070 0.930 25 H 0.109 0.891 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.649 5.667 2.257 7.669 hybrid contribution -0.374 0.058 -0.834 0.915 sum 4.275 5.725 1.423 7.285 Atomic orbital electron populations 1.21916 0.94841 1.01157 1.02282 1.22522 0.94712 0.95384 0.83413 0.89176 1.88772 1.41148 1.68235 1.33948 1.23700 0.87263 0.96867 0.94519 1.23082 0.99466 0.98568 0.97185 1.23146 0.99093 0.98407 0.98096 0.88622 1.19782 0.83539 0.87028 0.83418 1.90357 1.65411 1.22997 1.69596 1.21249 1.16478 1.02763 1.18384 0.89612 1.27184 0.96527 0.95721 0.99645 1.70093 1.20739 1.16379 1.34820 0.85222 0.78110 0.78669 0.77397 1.17715 1.19805 1.17554 0.95537 0.91411 0.90533 0.89653 0.87980 0.92978 0.89127 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.32 8.41 71.98 0.61 -5.72 15 2 C 0.10 3.89 4.05 30.97 0.13 4.02 15 3 H 0.09 3.03 8.14 -2.39 -0.02 3.01 15 4 O -0.40 -15.98 11.19 -148.98 -1.67 -17.64 15 5 C 0.05 1.70 7.72 72.75 0.56 2.27 15 6 C -0.15 -5.76 6.66 31.98 0.21 -5.55 15 7 C -0.17 -7.37 3.31 -10.55 -0.03 -7.40 15 8 H 0.10 3.74 8.13 -2.39 -0.02 3.72 15 9 C 0.36 20.35 4.10 26.37 0.11 20.46 15 10 O -0.59 -38.50 13.65 -3.51 -0.05 -38.55 15 11 C -0.56 -30.26 7.92 23.49 0.19 -30.08 15 12 H 0.09 4.18 7.85 -2.91 -0.02 4.16 15 13 C 0.03 1.51 5.50 85.43 0.47 1.98 15 14 N -0.79 -46.67 11.72 21.91 0.26 -46.41 15 15 Si 0.99 39.05 29.56 68.60 2.03 41.08 15 16 H -0.25 -9.45 7.11 99.48 0.71 -8.75 15 17 H -0.27 -10.47 7.11 99.48 0.71 -9.76 15 18 H -0.25 -9.37 7.11 99.48 0.71 -8.66 15 19 H 0.03 1.36 7.04 -2.39 -0.02 1.34 15 20 H 0.07 2.52 8.14 -2.39 -0.02 2.50 15 21 H 0.08 3.42 6.64 -2.39 -0.02 3.40 15 22 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 23 H 0.10 2.89 8.14 -2.39 -0.02 2.87 15 24 H 0.05 2.48 6.84 -2.39 -0.02 2.46 15 25 H 0.09 3.05 8.14 -2.39 -0.02 3.03 15 26 H 0.28 14.87 8.29 -92.71 -0.77 14.10 15 Total: -1.00 -69.90 220.64 3.97 -65.93 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.16 Total: 15.62 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 2.24 Total: -20.02 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.26 Total: -46.41 kcal Atomic # 8 Polarization: -54.48 SS G_CDS: -1.71 Total: -56.19 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -69.90 3.97 -65.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086757945.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.806 kcal (2) G-P(sol) polarization free energy of solvation -69.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds