Wall clock time and date at job start Mon Mar 30 2020 02:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 110.53391 * 2 1 4 4 C 1.54263 * 110.49146 * 122.61079 * 2 1 3 5 5 C 1.53877 * 106.64065 * 95.09554 * 4 2 1 6 6 C 1.54272 * 106.59703 * 359.97438 * 5 4 2 7 7 O 1.42905 * 110.48465 * 264.80110 * 6 5 4 8 8 C 1.50695 * 110.48450 * 142.28923 * 6 5 4 9 9 H 1.08012 * 119.99517 * 237.81151 * 8 6 5 10 10 C 1.37874 * 120.00519 * 57.81265 * 8 6 5 11 11 N 1.31515 * 119.99430 * 5.83172 * 10 8 6 12 12 Si 1.86799 * 120.00353 * 185.82413 * 10 8 6 13 13 H 1.48505 * 109.46692 * 94.98827 * 12 10 8 14 14 H 1.48495 * 109.47387 * 214.98807 * 12 10 8 15 15 H 1.48501 * 109.47078 * 334.99555 * 12 10 8 16 16 C 1.54893 * 104.19510 * 23.60597 * 6 5 4 17 17 H 1.08998 * 109.47359 * 298.83513 * 1 2 3 18 18 H 1.08996 * 109.47550 * 58.84637 * 1 2 3 19 19 H 1.09004 * 109.47040 * 178.84184 * 1 2 3 20 20 H 1.09006 * 109.47148 * 181.15993 * 3 2 1 21 21 H 1.08999 * 109.47474 * 301.15672 * 3 2 1 22 22 H 1.08999 * 109.47067 * 61.16058 * 3 2 1 23 23 H 1.09000 * 110.03014 * 335.78546 * 4 2 1 24 24 H 1.09003 * 110.03427 * 214.40782 * 4 2 1 25 25 H 1.09001 * 110.03074 * 119.26286 * 5 4 2 26 26 H 1.08995 * 110.02912 * 240.69374 * 5 4 2 27 27 H 0.96702 * 113.99402 * 298.54524 * 7 6 5 28 28 H 0.96999 * 119.99782 * 179.97438 * 11 10 8 29 29 H 1.09001 * 110.75268 * 80.37366 * 16 6 5 30 30 H 1.09000 * 110.75661 * 203.74197 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0666 1.4328 0.0000 4 6 2.0700 -0.7788 1.2172 5 6 2.3469 -2.2135 0.7349 6 6 1.9649 -2.2576 -0.7592 7 8 0.6291 -2.7393 -0.9198 8 6 2.9320 -3.1227 -1.5254 9 1 3.4849 -2.7094 -2.3561 10 6 3.1110 -4.4418 -1.1662 11 7 2.3566 -4.9767 -0.2312 12 14 4.4248 -5.4690 -2.0077 13 1 5.6666 -5.4477 -1.1936 14 1 3.9468 -6.8682 -2.1449 15 1 4.7056 -4.9076 -3.3535 16 6 2.0719 -0.7834 -1.2222 17 1 -0.3634 0.4956 0.9002 18 1 -0.3634 0.5316 -0.8794 19 1 -0.3633 -1.0275 -0.0208 20 1 3.1563 1.4127 -0.0208 21 1 1.6962 1.9596 -0.8794 22 1 1.7298 1.9469 0.9002 23 1 1.3258 -0.7896 2.0136 24 1 2.9921 -0.3204 1.5746 25 1 3.4036 -2.4512 0.8574 26 1 1.7371 -2.9206 1.2971 27 1 0.4935 -3.6390 -0.5924 28 1 2.4822 -5.9048 0.0213 29 1 3.1094 -0.5158 -1.4225 30 1 1.4502 -0.6082 -2.1002 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087773911.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:41 Heat of formation + Delta-G solvation = -95.882424 kcal Electronic energy + Delta-G solvation = -12038.439356 eV Core-core repulsion = 10024.751143 eV Total energy + Delta-G solvation = -2013.688213 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.09475 -36.27341 -34.13788 -31.76206 -29.63360 -27.99084 -26.99076 -24.36287 -21.06612 -19.59207 -18.78531 -16.87238 -16.46625 -15.59990 -15.44203 -14.71592 -14.43980 -14.00580 -13.50612 -13.15605 -13.09678 -12.89036 -12.65765 -12.35044 -12.34099 -12.16819 -11.67895 -11.47624 -11.24659 -11.09990 -10.81655 -10.44636 -9.92726 -8.18123 -6.32737 1.38230 1.40360 1.50262 2.39578 3.06105 3.86935 3.95334 4.08810 4.34858 4.66735 4.71861 4.76753 4.81092 4.89159 5.02551 5.10948 5.13398 5.24369 5.34856 5.40754 5.48545 5.55725 5.63166 5.75630 5.78103 5.96832 6.27468 6.74445 7.38219 7.54375 8.86395 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.064701 B = 0.013231 C = 0.012728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.654225 B = 2115.677972 C = 2199.395643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.068 4.068 3 C -0.130 4.130 4 C -0.110 4.110 5 C -0.112 4.112 6 C 0.234 3.766 7 O -0.590 6.590 8 C -0.563 4.563 9 H 0.049 0.951 10 C 0.028 3.972 11 N -0.912 5.912 12 Si 0.954 3.046 13 H -0.275 1.275 14 H -0.281 1.281 15 H -0.273 1.273 16 C -0.093 4.093 17 H 0.061 0.939 18 H 0.050 0.950 19 H 0.051 0.949 20 H 0.054 0.946 21 H 0.059 0.941 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.032 0.968 26 H 0.035 0.965 27 H 0.368 0.632 28 H 0.267 0.733 29 H 0.064 0.936 30 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.305 7.635 1.933 7.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.068 4.068 3 C -0.187 4.187 4 C -0.147 4.147 5 C -0.151 4.151 6 C 0.195 3.805 7 O -0.398 6.398 8 C -0.601 4.601 9 H 0.067 0.933 10 C -0.173 4.173 11 N -0.552 5.552 12 Si 0.780 3.220 13 H -0.200 1.200 14 H -0.207 1.207 15 H -0.198 1.198 16 C -0.131 4.131 17 H 0.080 0.920 18 H 0.070 0.930 19 H 0.070 0.930 20 H 0.073 0.927 21 H 0.078 0.922 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.216 0.784 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.417 8.079 1.771 8.282 hybrid contribution 0.805 -1.639 -0.163 1.833 sum 0.387 6.440 1.607 6.649 Atomic orbital electron populations 1.21793 0.94227 1.01989 1.00928 1.21374 0.95862 0.95253 0.94297 1.21779 1.00589 0.94163 1.02139 1.22272 1.00129 0.95132 0.97216 1.22432 0.98844 0.95233 0.98585 1.19617 0.79648 0.90497 0.90753 1.86093 1.32190 1.34952 1.86519 1.22052 1.24686 0.96959 1.16447 0.93317 1.25699 0.97559 0.98677 0.95333 1.69826 1.39590 1.14222 1.31550 0.85609 0.79527 0.77933 0.78922 1.20048 1.20661 1.19761 1.22501 0.99355 0.94194 0.97032 0.92040 0.93044 0.93034 0.92738 0.92236 0.91480 0.92250 0.91735 0.94946 0.94569 0.78378 0.92415 0.91726 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 8.33 71.98 0.60 -3.94 16 2 C -0.07 -2.42 0.90 -51.09 -0.05 -2.47 16 3 C -0.13 -3.60 8.46 71.98 0.61 -3.00 16 4 C -0.11 -4.17 5.93 31.32 0.19 -3.98 16 5 C -0.11 -5.38 5.08 31.32 0.16 -5.22 16 6 C 0.23 11.90 0.81 -10.46 -0.01 11.89 16 7 O -0.59 -31.23 10.93 -148.98 -1.63 -32.86 16 8 C -0.56 -31.47 8.13 25.60 0.21 -31.26 16 9 H 0.05 2.73 7.79 -2.90 -0.02 2.71 16 10 C 0.03 1.50 5.22 84.65 0.44 1.94 16 11 N -0.91 -50.54 10.89 21.45 0.23 -50.30 16 12 Si 0.95 43.42 29.54 68.60 2.03 45.44 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 15 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 16 C -0.09 -4.04 4.97 31.91 0.16 -3.88 16 17 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 18 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 19 H 0.05 2.07 5.98 -2.38 -0.01 2.06 16 20 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 21 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.06 2.09 7.85 -2.39 -0.02 2.07 16 24 H 0.06 2.21 7.84 -2.39 -0.02 2.19 16 25 H 0.03 1.64 7.82 -2.39 -0.02 1.62 16 26 H 0.04 1.84 7.83 -2.39 -0.02 1.82 16 27 H 0.37 20.20 7.45 -74.06 -0.55 19.65 16 28 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 29 H 0.06 2.74 7.96 -2.39 -0.02 2.72 16 30 H 0.05 2.07 8.05 -2.39 -0.02 2.05 16 Total: -1.00 -57.88 238.09 3.49 -54.38 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.55 Total: 23.26 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 2.31 Total: -39.93 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.23 Total: -50.30 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.63 Total: -32.86 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -57.88 3.49 -54.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087773911.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.498 kcal (2) G-P(sol) polarization free energy of solvation -57.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds