Wall clock time and date at job start Mon Mar 30 2020 02:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 110.43572 * 2 1 4 4 C 1.54890 * 110.48565 * 237.32030 * 2 1 3 5 5 C 1.54962 * 102.77993 * 203.40592 * 4 2 1 6 6 C 1.54266 * 104.16008 * 37.88379 * 5 4 2 7 7 O 1.42897 * 110.03132 * 95.75825 * 6 5 4 8 8 C 1.50706 * 110.03104 * 217.13706 * 6 5 4 9 9 H 1.08000 * 119.99302 * 117.91060 * 8 6 5 10 10 C 1.37871 * 120.00436 * 297.63593 * 8 6 5 11 11 N 1.31515 * 119.99684 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 120.00405 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.46683 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.47426 * 119.99743 * 12 10 8 15 15 H 1.48501 * 109.46833 * 239.99986 * 12 10 8 16 16 C 1.53867 * 106.64256 * 336.44808 * 6 5 4 17 17 H 1.09006 * 109.46501 * 297.45494 * 1 2 3 18 18 H 1.08997 * 109.47425 * 57.45599 * 1 2 3 19 19 H 1.08999 * 109.47106 * 177.45998 * 1 2 3 20 20 H 1.08998 * 109.46696 * 182.54529 * 3 2 1 21 21 H 1.09000 * 109.46954 * 302.54763 * 3 2 1 22 22 H 1.08996 * 109.46712 * 62.54825 * 3 2 1 23 23 H 1.09007 * 110.75565 * 321.68997 * 4 2 1 24 24 H 1.09001 * 110.75854 * 84.87846 * 4 2 1 25 25 H 1.09003 * 110.47320 * 279.23488 * 5 4 2 26 26 H 1.08996 * 110.53471 * 156.56523 * 5 4 2 27 27 H 0.96698 * 114.00199 * 62.09112 * 7 6 5 28 28 H 0.97004 * 120.00247 * 180.02562 * 11 10 8 29 29 H 1.09004 * 110.03457 * 119.25597 * 16 6 5 30 30 H 1.08998 * 110.03400 * 240.64628 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4338 0.0000 4 6 2.0720 -0.7834 -1.2213 5 6 3.4912 -1.2000 -0.7589 6 6 3.3166 -1.5396 0.7358 7 8 3.1239 -2.9461 0.8989 8 6 4.5282 -1.0915 1.5119 9 1 4.4279 -0.3445 2.2854 10 6 5.7635 -1.6393 1.2385 11 7 5.8844 -2.5533 0.3006 12 14 7.2652 -1.0844 2.2010 13 1 6.8644 -0.0544 3.1928 14 1 7.8582 -2.2481 2.9074 15 1 8.2665 -0.5090 1.2676 16 6 2.0700 -0.7774 1.2182 17 1 -0.3632 0.4739 0.9120 18 1 -0.3634 0.5528 -0.8663 19 1 -0.3633 -1.0266 -0.0455 20 1 3.1531 1.4157 -0.0456 21 1 1.6729 1.9672 -0.8663 22 1 1.7471 1.9396 0.9119 23 1 1.4580 -1.6618 -1.4203 24 1 2.1220 -0.1415 -2.1008 25 1 4.1906 -0.3733 -0.8830 26 1 3.8318 -2.0755 -1.3117 27 1 3.8718 -3.4826 0.6025 28 1 6.7535 -2.9391 0.1085 29 1 1.3176 -1.4804 1.5758 30 1 2.3412 -0.0840 2.0142 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087773912.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:43 Heat of formation + Delta-G solvation = -79.396159 kcal Electronic energy + Delta-G solvation = -12024.464740 eV Core-core repulsion = 10011.491425 eV Total energy + Delta-G solvation = -2012.973315 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.35856 -34.61806 -31.98064 -29.86188 -27.83955 -26.72793 -25.11366 -22.63649 -19.17122 -17.92263 -16.90403 -14.79632 -14.48584 -14.12758 -13.69025 -13.21474 -12.75898 -12.08327 -12.03687 -11.52753 -11.25042 -11.18016 -10.92196 -10.72773 -10.37947 -10.33769 -10.09393 -9.80041 -9.59937 -9.42832 -8.96689 -8.49060 -7.90931 -6.10944 -4.17620 3.25471 3.34003 3.38404 4.37718 5.12887 5.40669 5.53752 5.55032 6.08908 6.11946 6.15019 6.29475 6.33154 6.38130 6.43928 6.56835 6.71023 6.82924 6.91021 7.02240 7.06258 7.19853 7.39319 7.63903 7.72706 7.94290 8.31567 8.85591 9.50469 9.68399 10.95746 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.056005 B = 0.014102 C = 0.013099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.833776 B = 1985.083832 C = 2137.062544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.071 4.071 3 C -0.132 4.132 4 C -0.118 4.118 5 C -0.116 4.116 6 C 0.246 3.754 7 O -0.595 6.595 8 C -0.530 4.530 9 H 0.059 0.941 10 C 0.066 3.934 11 N -0.899 5.899 12 Si 0.895 3.105 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.284 1.284 16 C -0.095 4.095 17 H 0.047 0.953 18 H 0.045 0.955 19 H 0.051 0.949 20 H 0.064 0.936 21 H 0.041 0.959 22 H 0.046 0.954 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.379 0.621 28 H 0.264 0.736 29 H 0.053 0.947 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.293 4.163 -1.708 6.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.071 4.071 3 C -0.189 4.189 4 C -0.156 4.156 5 C -0.154 4.154 6 C 0.207 3.793 7 O -0.405 6.405 8 C -0.568 4.568 9 H 0.077 0.923 10 C -0.135 4.135 11 N -0.540 5.540 12 Si 0.723 3.277 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.210 1.210 16 C -0.133 4.133 17 H 0.066 0.934 18 H 0.064 0.936 19 H 0.070 0.930 20 H 0.083 0.917 21 H 0.060 0.940 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.229 0.771 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.736 4.258 -1.543 7.309 hybrid contribution 1.520 0.093 0.224 1.540 sum -4.216 4.352 -1.319 6.201 Atomic orbital electron populations 1.21828 0.95841 1.01054 1.00431 1.21338 0.93693 0.95229 0.96833 1.21767 1.02060 0.95118 0.99935 1.22654 0.98932 0.98198 0.95768 1.22830 0.93015 1.00497 0.99088 1.19219 0.90780 0.78958 0.90358 1.86109 1.46579 1.19580 1.88195 1.21905 0.92631 1.22799 1.19450 0.92304 1.25027 0.98994 0.94713 0.94727 1.69677 1.24743 1.28145 1.31407 0.86489 0.82612 0.78611 0.79984 1.19755 1.20943 1.20997 1.22215 0.97596 0.97481 0.95997 0.93397 0.93595 0.92993 0.91665 0.93964 0.93515 0.92686 0.93540 0.92460 0.92329 0.77116 0.92578 0.92851 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.46 37.16 0.31 -1.81 16 2 C -0.07 -1.33 0.90 -152.85 -0.14 -1.47 16 3 C -0.13 -2.28 8.40 37.16 0.31 -1.97 16 4 C -0.12 -2.35 5.81 -24.70 -0.14 -2.49 16 5 C -0.12 -2.76 4.80 -25.03 -0.12 -2.88 16 6 C 0.25 6.30 0.98 -90.65 -0.09 6.21 16 7 O -0.60 -16.19 12.88 -35.23 -0.45 -16.64 16 8 C -0.53 -14.58 8.08 -34.44 -0.28 -14.86 16 9 H 0.06 1.62 7.33 -52.49 -0.38 1.23 16 10 C 0.07 1.81 5.25 -17.82 -0.09 1.72 16 11 N -0.90 -24.73 10.72 55.43 0.59 -24.13 16 12 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 13 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 C -0.10 -2.12 5.39 -25.61 -0.14 -2.26 16 17 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 18 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 19 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 20 H 0.06 1.24 7.35 -51.93 -0.38 0.86 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.05 1.08 8.04 -51.93 -0.42 0.67 16 24 H 0.05 0.83 8.05 -51.93 -0.42 0.42 16 25 H 0.06 1.42 7.36 -51.93 -0.38 1.04 16 26 H 0.06 1.48 7.87 -51.93 -0.41 1.07 16 27 H 0.38 10.43 7.11 45.56 0.32 10.76 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.05 1.18 7.65 -51.93 -0.40 0.79 16 30 H 0.06 1.32 7.08 -51.93 -0.37 0.95 16 LS Contribution 239.35 15.07 3.61 3.61 Total: -1.00 -27.85 239.35 -5.73 -33.58 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -4.08 Total: 7.28 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -0.37 Total: -19.82 kcal Atomic # 7 Polarization: -24.73 SS G_CDS: 0.59 Total: -24.13 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.45 Total: -16.64 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -27.85 -5.73 -33.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087773912.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.820 kcal (2) G-P(sol) polarization free energy of solvation -27.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds