Wall clock time and date at job start Mon Mar 30 2020 02:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 110.43572 * 2 1 4 4 C 1.54890 * 110.48565 * 237.32030 * 2 1 3 5 5 C 1.54962 * 102.77993 * 203.40592 * 4 2 1 6 6 C 1.54266 * 104.16008 * 37.88379 * 5 4 2 7 7 O 1.42897 * 110.03132 * 95.75825 * 6 5 4 8 8 C 1.50706 * 110.03104 * 217.13706 * 6 5 4 9 9 H 1.08000 * 119.99302 * 117.91060 * 8 6 5 10 10 C 1.37871 * 120.00436 * 297.63593 * 8 6 5 11 11 N 1.31515 * 119.99684 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 120.00405 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.46683 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.47426 * 119.99743 * 12 10 8 15 15 H 1.48501 * 109.46833 * 239.99986 * 12 10 8 16 16 C 1.53867 * 106.64256 * 336.44808 * 6 5 4 17 17 H 1.09006 * 109.46501 * 297.45494 * 1 2 3 18 18 H 1.08997 * 109.47425 * 57.45599 * 1 2 3 19 19 H 1.08999 * 109.47106 * 177.45998 * 1 2 3 20 20 H 1.08998 * 109.46696 * 182.54529 * 3 2 1 21 21 H 1.09000 * 109.46954 * 302.54763 * 3 2 1 22 22 H 1.08996 * 109.46712 * 62.54825 * 3 2 1 23 23 H 1.09007 * 110.75565 * 321.68997 * 4 2 1 24 24 H 1.09001 * 110.75854 * 84.87846 * 4 2 1 25 25 H 1.09003 * 110.47320 * 279.23488 * 5 4 2 26 26 H 1.08996 * 110.53471 * 156.56523 * 5 4 2 27 27 H 0.96698 * 114.00199 * 62.09112 * 7 6 5 28 28 H 0.97004 * 120.00247 * 180.02562 * 11 10 8 29 29 H 1.09004 * 110.03457 * 119.25597 * 16 6 5 30 30 H 1.08998 * 110.03400 * 240.64628 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4338 0.0000 4 6 2.0720 -0.7834 -1.2213 5 6 3.4912 -1.2000 -0.7589 6 6 3.3166 -1.5396 0.7358 7 8 3.1239 -2.9461 0.8989 8 6 4.5282 -1.0915 1.5119 9 1 4.4279 -0.3445 2.2854 10 6 5.7635 -1.6393 1.2385 11 7 5.8844 -2.5533 0.3006 12 14 7.2652 -1.0844 2.2010 13 1 6.8644 -0.0544 3.1928 14 1 7.8582 -2.2481 2.9074 15 1 8.2665 -0.5090 1.2676 16 6 2.0700 -0.7774 1.2182 17 1 -0.3632 0.4739 0.9120 18 1 -0.3634 0.5528 -0.8663 19 1 -0.3633 -1.0266 -0.0455 20 1 3.1531 1.4157 -0.0456 21 1 1.6729 1.9672 -0.8663 22 1 1.7471 1.9396 0.9119 23 1 1.4580 -1.6618 -1.4203 24 1 2.1220 -0.1415 -2.1008 25 1 4.1906 -0.3733 -0.8830 26 1 3.8318 -2.0755 -1.3117 27 1 3.8718 -3.4826 0.6025 28 1 6.7535 -2.9391 0.1085 29 1 1.3176 -1.4804 1.5758 30 1 2.3412 -0.0840 2.0142 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087773912.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:43 Heat of formation + Delta-G solvation = -97.205146 kcal Electronic energy + Delta-G solvation = -12025.236995 eV Core-core repulsion = 10011.491425 eV Total energy + Delta-G solvation = -2013.745570 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.10442 -36.50103 -34.10408 -31.59529 -29.69153 -28.05281 -27.02812 -24.38964 -21.09639 -19.50266 -18.99751 -16.84426 -16.33276 -15.85003 -15.51751 -14.68173 -14.35788 -13.92526 -13.48688 -13.38197 -13.12418 -12.79951 -12.60193 -12.42359 -12.23089 -12.22034 -11.89888 -11.38604 -11.22071 -11.09049 -10.92152 -10.54782 -9.97640 -8.18386 -6.33049 1.37167 1.40088 1.50920 2.38977 3.05149 3.83342 3.99279 4.03027 4.38868 4.63074 4.72315 4.75669 4.78432 4.93535 4.96276 5.09853 5.14774 5.23774 5.29132 5.37111 5.38976 5.52731 5.62059 5.69165 5.78677 5.93631 6.25307 6.74485 7.38061 7.52856 8.86679 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.056005 B = 0.014102 C = 0.013099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.833776 B = 1985.083832 C = 2137.062544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.067 4.067 3 C -0.129 4.129 4 C -0.111 4.111 5 C -0.108 4.108 6 C 0.227 3.773 7 O -0.605 6.605 8 C -0.554 4.554 9 H 0.050 0.950 10 C 0.023 3.977 11 N -0.917 5.917 12 Si 0.956 3.044 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.278 1.278 16 C -0.095 4.095 17 H 0.060 0.940 18 H 0.070 0.930 19 H 0.048 0.952 20 H 0.038 0.962 21 H 0.069 0.931 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.034 0.966 27 H 0.372 0.628 28 H 0.267 0.733 29 H 0.048 0.952 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 5.381 -1.920 8.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.067 4.067 3 C -0.186 4.186 4 C -0.148 4.148 5 C -0.147 4.147 6 C 0.188 3.812 7 O -0.414 6.414 8 C -0.593 4.593 9 H 0.069 0.931 10 C -0.176 4.176 11 N -0.557 5.557 12 Si 0.782 3.218 13 H -0.195 1.195 14 H -0.206 1.206 15 H -0.203 1.203 16 C -0.132 4.132 17 H 0.079 0.921 18 H 0.089 0.911 19 H 0.067 0.933 20 H 0.058 0.942 21 H 0.088 0.912 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.221 0.779 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.521 5.481 -1.757 8.698 hybrid contribution 1.780 -0.316 0.299 1.832 sum -4.742 5.165 -1.458 7.161 Atomic orbital electron populations 1.21770 0.92926 1.01565 1.02326 1.21347 0.95983 0.95301 0.94049 1.21739 1.00422 0.94493 1.01944 1.22613 0.96010 0.98947 0.97242 1.22617 0.95322 0.98779 0.97965 1.19576 0.91950 0.78237 0.91422 1.86105 1.46283 1.20661 1.88348 1.22164 0.94038 1.23166 1.19890 0.93139 1.25734 1.01503 0.94780 0.95573 1.69766 1.25404 1.28509 1.32049 0.85537 0.79307 0.78203 0.78745 1.19534 1.20581 1.20317 1.22212 0.96114 0.97316 0.97571 0.92101 0.91077 0.93311 0.94235 0.91156 0.92261 0.92510 0.91080 0.94165 0.94708 0.77882 0.92358 0.93299 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 8.46 71.98 0.61 -3.00 16 2 C -0.07 -2.36 0.90 -51.10 -0.05 -2.41 16 3 C -0.13 -4.12 8.40 71.98 0.60 -3.52 16 4 C -0.11 -4.21 5.81 31.91 0.19 -4.03 16 5 C -0.11 -5.21 4.80 31.69 0.15 -5.06 16 6 C 0.23 11.75 0.98 -10.82 -0.01 11.74 16 7 O -0.61 -33.58 12.88 -148.98 -1.92 -35.50 16 8 C -0.55 -30.98 8.08 25.60 0.21 -30.78 16 9 H 0.05 2.82 7.33 -2.91 -0.02 2.80 16 10 C 0.02 1.29 5.25 84.65 0.44 1.73 16 11 N -0.92 -51.09 10.72 21.45 0.23 -50.86 16 12 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 15 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 16 C -0.09 -4.16 5.39 31.32 0.17 -3.99 16 17 H 0.06 1.55 8.14 -2.38 -0.02 1.54 16 18 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 19 H 0.05 1.39 8.12 -2.39 -0.02 1.37 16 20 H 0.04 1.45 7.35 -2.39 -0.02 1.43 16 21 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.06 2.13 8.04 -2.38 -0.02 2.12 16 24 H 0.07 2.36 8.05 -2.39 -0.02 2.34 16 25 H 0.04 2.02 7.36 -2.39 -0.02 2.00 16 26 H 0.03 1.79 7.87 -2.39 -0.02 1.77 16 27 H 0.37 21.14 7.11 -74.06 -0.53 20.61 16 28 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.05 2.14 7.65 -2.39 -0.02 2.13 16 30 H 0.05 2.39 7.08 -2.39 -0.02 2.37 16 Total: -1.00 -59.17 239.35 3.23 -55.94 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.58 Total: 24.16 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: 2.31 Total: -39.30 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.23 Total: -50.86 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.92 Total: -35.50 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -59.17 3.23 -55.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087773912.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.265 kcal (2) G-P(sol) polarization free energy of solvation -59.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds