Wall clock time and date at job start Mon Mar 30 2020 01:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 119.99619 * 2 1 4 4 H 1.48493 * 109.46988 * 239.99587 * 3 2 1 5 5 H 1.48499 * 109.47102 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46824 * 120.00079 * 3 2 1 7 7 C 1.38950 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99623 * 180.02562 * 7 2 1 9 9 N 1.37103 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99802 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00377 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99861 * 180.02562 * 10 9 7 13 13 N 1.46906 * 112.84865 * 334.67210 * 12 10 9 14 14 C 1.53781 * 113.61400 * 105.86605 * 12 10 9 15 15 C 1.54052 * 86.98249 * 140.01892 * 14 12 10 16 16 C 1.53780 * 87.08219 * 334.57032 * 15 14 12 17 17 H 0.97000 * 120.00443 * 0.02562 * 1 2 3 18 18 H 0.96998 * 119.99558 * 0.02562 * 9 7 2 19 19 H 1.00896 * 111.00309 * 50.33004 * 13 12 10 20 20 H 1.00902 * 110.99923 * 174.29167 * 13 12 10 21 21 H 1.08996 * 113.61535 * 254.61506 * 14 12 10 22 22 H 1.08996 * 113.61155 * 25.51736 * 14 12 10 23 23 H 1.09003 * 113.61808 * 220.01819 * 15 14 12 24 24 H 1.09006 * 113.60959 * 89.11938 * 15 14 12 25 25 H 1.08999 * 113.61093 * 270.88413 * 16 15 14 26 26 H 1.08993 * 113.61732 * 139.97493 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2124 5 1 1.2830 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3907 0.0016 10 6 1.9974 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2439 -4.8629 0.0022 13 7 -0.1008 -4.7450 0.5818 14 6 1.2690 -5.5893 -1.3530 15 6 1.4396 -6.8971 -0.5569 16 6 2.0554 -6.0425 0.5635 17 1 -0.4851 0.8400 -0.0004 18 1 0.3535 -2.3906 0.0016 19 1 -0.6064 -3.9757 0.1690 20 1 -0.6135 -5.6086 0.4844 21 1 0.3275 -5.5283 -1.8987 22 1 2.1328 -5.3367 -1.9678 23 1 2.1431 -7.5957 -1.0101 24 1 0.4953 -7.3658 -0.2797 25 1 3.1339 -5.9135 0.4715 26 1 1.7483 -6.3470 1.5639 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088050789.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:00 Heat of formation + Delta-G solvation = -21.398178 kcal Electronic energy + Delta-G solvation = -11311.746978 eV Core-core repulsion = 9197.748301 eV Total energy + Delta-G solvation = -2113.998677 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.62477 -36.76854 -33.96186 -31.70414 -30.54227 -25.83281 -25.31285 -24.00338 -20.17626 -18.23483 -17.88423 -16.44682 -15.32569 -14.85256 -14.24637 -13.95788 -13.69489 -13.34900 -12.53588 -12.11943 -11.68929 -11.56830 -11.03198 -10.67023 -10.56602 -10.41647 -10.23560 -10.10586 -9.49366 -8.49453 -8.20439 -7.95302 -6.40810 -3.81192 3.20600 3.26676 3.31435 3.82152 4.18845 4.76940 4.89776 4.97964 4.99275 5.19927 5.43942 5.51859 5.87506 6.08275 6.18427 6.29949 6.33316 6.51439 6.73444 7.41681 7.55730 7.71552 8.08486 8.62193 9.18114 9.56867 10.07345 10.76643 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.079020 B = 0.010876 C = 0.010093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.256093 B = 2573.917486 C = 2773.438423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.304 4.304 8 H 0.103 0.897 9 N -0.552 5.552 10 C 0.459 3.541 11 O -0.595 6.595 12 C 0.085 3.915 13 N -0.818 5.818 14 C -0.159 4.159 15 C -0.143 4.143 16 C -0.111 4.111 17 H 0.272 0.728 18 H 0.392 0.608 19 H 0.346 0.654 20 H 0.338 0.662 21 H 0.063 0.937 22 H 0.088 0.912 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.097 -8.208 -1.466 8.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.433 4.433 8 H 0.120 0.880 9 N -0.187 5.187 10 C 0.244 3.756 11 O -0.480 6.480 12 C -0.012 4.012 13 N -0.350 5.350 14 C -0.199 4.199 15 C -0.180 4.180 16 C -0.150 4.150 17 H 0.082 0.918 18 H 0.226 0.774 19 H 0.161 0.839 20 H 0.151 0.849 21 H 0.082 0.918 22 H 0.107 0.893 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.116 0.884 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.063 -7.857 -0.764 7.965 hybrid contribution -0.636 0.693 -0.987 1.363 sum -1.699 -7.164 -1.750 7.568 Atomic orbital electron populations 1.69603 1.05944 1.28319 1.50199 1.25278 0.95651 0.99757 0.97140 0.85902 0.78771 0.80371 0.79083 1.19908 1.20933 1.19843 1.19715 0.93419 0.82411 1.47775 0.87963 1.41890 1.09224 1.04619 1.62984 1.19409 0.87800 0.84197 0.84181 1.90496 1.13655 1.86842 1.57010 1.22071 0.90421 0.94752 0.93997 1.58641 1.03201 1.09558 1.63559 1.23672 1.02400 0.96668 0.97158 1.22890 1.00740 0.96321 0.98082 1.22892 1.00761 0.93358 0.97972 0.91770 0.77358 0.83851 0.84881 0.91797 0.89321 0.91449 0.90608 0.88437 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.76 13.05 55.50 0.72 -24.03 15 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 15 3 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 15 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 7 C -0.30 -8.71 9.68 -14.93 -0.14 -8.86 15 8 H 0.10 3.06 7.16 -52.49 -0.38 2.68 15 9 N -0.55 -14.56 5.23 -10.96 -0.06 -14.62 15 10 C 0.46 11.47 7.10 -10.99 -0.08 11.39 15 11 O -0.59 -16.81 15.61 5.55 0.09 -16.73 15 12 C 0.08 1.60 1.69 -131.94 -0.22 1.38 15 13 N -0.82 -13.58 9.30 0.47 0.00 -13.58 15 14 C -0.16 -2.56 7.38 -25.78 -0.19 -2.75 15 15 C -0.14 -1.94 7.74 -25.78 -0.20 -2.14 15 16 C -0.11 -1.89 7.33 -25.92 -0.19 -2.08 15 17 H 0.27 7.08 8.31 -40.82 -0.34 6.74 15 18 H 0.39 9.83 6.10 -40.82 -0.25 9.58 15 19 H 0.35 5.84 7.31 -39.29 -0.29 5.55 15 20 H 0.34 4.49 8.14 -39.29 -0.32 4.17 15 21 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.09 1.55 8.09 -51.93 -0.42 1.13 15 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.08 0.87 7.70 -51.93 -0.40 0.47 15 25 H 0.10 1.82 7.38 -51.93 -0.38 1.43 15 26 H 0.07 1.13 8.14 -51.93 -0.42 0.70 15 LS Contribution 225.10 15.07 3.39 3.39 Total: -1.00 -31.09 225.10 -4.83 -35.92 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -2.84 Total: 15.84 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.12 Total: -2.50 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.67 Total: -52.23 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.09 Total: -16.73 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -31.09 -4.83 -35.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088050789.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.523 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds