Wall clock time and date at job start Mon Mar 30 2020 01:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 110.27060 * 2 1 4 4 C 1.54940 * 110.30838 * 122.19925 * 2 1 3 5 5 C 1.55304 * 100.94178 * 155.36346 * 4 2 1 6 6 C 1.54386 * 102.25066 * 325.86644 * 5 4 2 7 7 H 1.09001 * 109.83022 * 261.84337 * 6 5 4 8 8 C 1.50702 * 109.90717 * 140.91427 * 6 5 4 9 9 O 1.21431 * 119.99801 * 260.37012 * 8 6 5 10 10 C 1.41024 * 119.99907 * 80.36695 * 8 6 5 11 11 H 1.08003 * 120.00225 * 359.97438 * 10 8 6 12 12 C 1.40460 * 119.99890 * 180.02562 * 10 8 6 13 13 N 1.30519 * 119.99991 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99948 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47440 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47468 * 119.99667 * 14 12 10 17 17 H 1.48503 * 109.47322 * 239.99087 * 14 12 10 18 18 O 1.43233 * 107.59122 * 21.35557 * 6 5 4 19 19 H 1.09001 * 109.47002 * 180.63167 * 1 2 3 20 20 H 1.08993 * 109.46955 * 300.63604 * 1 2 3 21 21 H 1.09000 * 109.47050 * 60.63433 * 1 2 3 22 22 H 1.09000 * 111.12531 * 273.27654 * 4 2 1 23 23 H 1.08996 * 111.12897 * 37.44363 * 4 2 1 24 24 H 1.08996 * 110.85000 * 207.67865 * 5 4 2 25 25 H 1.09004 * 111.02594 * 84.13242 * 5 4 2 26 26 H 0.97003 * 119.99979 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7743 1.2296 5 6 3.4700 -1.2032 0.7178 6 6 3.2113 -1.4411 -0.7856 7 1 3.0625 -2.5048 -0.9713 8 6 4.3809 -0.9399 -1.5931 9 8 4.3231 0.1442 -2.1369 10 6 5.5423 -1.7301 -1.7171 11 1 5.5939 -2.6942 -1.2330 12 6 6.6326 -1.2628 -2.4693 13 7 6.5706 -0.0975 -3.0539 14 14 8.1714 -2.3091 -2.6330 15 1 7.9904 -3.5768 -1.8810 16 1 8.4129 -2.6136 -4.0663 17 1 9.3345 -1.5686 -2.0816 18 8 2.0286 -0.7156 -1.1414 19 1 -0.3633 -1.0276 0.0113 20 1 -0.3633 0.5237 0.8842 21 1 -0.3633 0.5040 -0.8956 22 1 2.1497 -0.1224 2.0993 23 1 1.4472 -1.6430 1.4491 24 1 3.7967 -2.1217 1.2053 25 1 4.2001 -0.4072 0.8645 26 1 7.3234 0.2250 -3.5737 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088141471.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:33 Heat of formation + Delta-G solvation = -99.782533 kcal Electronic energy + Delta-G solvation = -11332.798175 eV Core-core repulsion = 9183.107747 eV Total energy + Delta-G solvation = -2149.690429 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.92243 -36.03254 -32.59223 -31.58221 -30.97397 -27.42312 -25.17263 -21.68828 -20.71881 -19.17864 -16.70916 -15.74059 -15.26836 -14.91736 -13.82506 -13.44307 -13.06808 -12.59123 -12.08040 -11.97174 -11.64239 -11.34668 -11.13891 -10.97048 -10.73814 -10.40877 -10.24967 -10.14967 -10.02770 -8.99750 -8.85660 -7.19744 -6.15285 -4.86866 3.05361 3.15283 3.20099 4.04079 4.18524 4.61048 5.11938 5.22586 5.45248 5.59559 5.70183 5.85230 5.94419 6.01759 6.15203 6.24135 6.43662 6.46393 6.62700 6.76443 6.87927 7.28485 7.92093 8.10004 8.86414 8.92615 10.39741 10.63336 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.084106 B = 0.010936 C = 0.010202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.831971 B = 2559.627506 C = 2743.828285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 H 0.064 0.936 4 C -0.152 4.152 5 C -0.131 4.131 6 C 0.039 3.961 7 H 0.073 0.927 8 C 0.358 3.642 9 O -0.529 6.529 10 C -0.536 4.536 11 H 0.069 0.931 12 C 0.083 3.917 13 N -0.742 5.742 14 Si 0.906 3.094 15 H -0.261 1.261 16 H -0.274 1.274 17 H -0.274 1.274 18 O -0.364 6.364 19 H 0.057 0.943 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.642 -2.785 6.982 8.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 H 0.082 0.918 4 C -0.190 4.190 5 C -0.169 4.169 6 C -0.020 4.020 7 H 0.091 0.909 8 C 0.250 3.750 9 O -0.416 6.416 10 C -0.568 4.568 11 H 0.088 0.912 12 C -0.140 4.140 13 N -0.370 5.370 14 Si 0.730 3.270 15 H -0.184 1.184 16 H -0.199 1.199 17 H -0.199 1.199 18 O -0.283 6.283 19 H 0.076 0.924 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.733 -2.106 6.417 8.247 hybrid contribution 0.899 -0.698 0.223 1.160 sum -3.834 -2.804 6.640 8.164 Atomic orbital electron populations 1.21861 0.94775 1.02068 1.01689 1.22838 0.93758 0.96132 0.85623 0.91804 1.23306 0.97174 1.00268 0.98269 1.22891 0.96616 1.02203 0.95220 1.23481 0.87812 0.95785 0.94922 0.90867 1.19775 0.86043 0.87779 0.81379 1.90400 1.82426 1.22888 1.45878 1.20750 1.00237 1.05085 1.30710 0.91226 1.26001 0.99771 0.94589 0.93651 1.69973 1.29738 1.16320 1.21013 0.86345 0.81105 0.80789 0.78792 1.18448 1.19881 1.19933 1.88423 1.41994 1.64853 1.33077 0.92419 0.91991 0.92162 0.90827 0.91010 0.90703 0.90569 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.62 37.16 0.36 -1.81 15 2 C 0.07 1.40 4.07 -25.70 -0.10 1.30 15 3 H 0.06 1.27 8.14 -51.93 -0.42 0.84 15 4 C -0.15 -2.46 6.57 -24.49 -0.16 -2.62 15 5 C -0.13 -2.55 6.54 -24.78 -0.16 -2.72 15 6 C 0.04 0.92 3.81 -27.16 -0.10 0.81 15 7 H 0.07 1.64 8.14 -51.93 -0.42 1.22 15 8 C 0.36 10.47 6.04 -33.25 -0.20 10.27 15 9 O -0.53 -17.71 15.14 -13.48 -0.20 -17.91 15 10 C -0.54 -15.20 9.22 -37.69 -0.35 -15.54 15 11 H 0.07 1.80 7.85 -52.48 -0.41 1.39 15 12 C 0.08 2.29 5.50 -17.27 -0.10 2.19 15 13 N -0.74 -22.06 11.72 55.57 0.65 -21.41 15 14 Si 0.91 19.72 29.56 -169.99 -5.03 14.70 15 15 H -0.26 -5.47 7.11 56.52 0.40 -5.07 15 16 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 18 O -0.36 -8.75 10.31 -54.14 -0.56 -9.31 15 19 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 21 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 23 H 0.07 1.03 8.06 -51.93 -0.42 0.61 15 24 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 25 H 0.08 1.59 7.84 -51.93 -0.41 1.18 15 26 H 0.27 7.22 8.29 -40.82 -0.34 6.89 15 LS Contribution 228.47 15.07 3.44 3.44 Total: -1.00 -33.93 228.47 -5.84 -39.77 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -3.33 Total: -1.17 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -0.82 Total: -8.11 kcal Atomic # 7 Polarization: -22.06 SS G_CDS: 0.65 Total: -21.41 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.76 Total: -27.22 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -33.93 -5.84 -39.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088141471.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.012 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds