Wall clock time and date at job start Mon Mar 30 2020 01:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36021 * 117.00025 * 2 1 4 4 C 1.31798 * 124.64853 * 93.33063 * 3 2 1 5 5 O 1.36014 * 124.50506 * 359.97438 * 4 3 2 6 6 C 1.51109 * 110.95582 * 180.02562 * 4 3 2 7 7 C 1.54602 * 104.78457 * 343.38447 * 6 4 3 8 8 C 1.51105 * 124.53317 * 273.23811 * 3 2 1 9 9 H 1.08996 * 110.37630 * 77.57620 * 8 3 2 10 10 C 1.50702 * 110.37274 * 315.34260 * 8 3 2 11 11 H 1.08001 * 120.00099 * 242.95564 * 10 8 3 12 12 C 1.37875 * 120.00258 * 62.69181 * 10 8 3 13 13 N 1.31515 * 119.99760 * 0.26775 * 12 10 8 14 14 Si 1.86801 * 120.00369 * 180.27116 * 12 10 8 15 15 H 1.48499 * 109.47024 * 89.99616 * 14 12 10 16 16 H 1.48488 * 109.47287 * 209.99771 * 14 12 10 17 17 H 1.48501 * 109.46820 * 330.00252 * 14 12 10 18 18 H 1.08996 * 109.48038 * 303.12100 * 1 2 3 19 19 H 1.09000 * 109.47020 * 63.12197 * 1 2 3 20 20 H 1.08998 * 109.47357 * 183.11581 * 1 2 3 21 21 H 0.96700 * 114.00190 * 355.08880 * 5 4 3 22 22 H 1.08997 * 110.37846 * 224.55542 * 6 4 3 23 23 H 1.08999 * 110.46979 * 102.25687 * 6 4 3 24 24 H 1.09000 * 111.00901 * 266.76860 * 7 6 4 25 25 H 1.09000 * 111.04682 * 142.91541 * 7 6 4 26 26 H 0.96999 * 120.00314 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 2.4428 1.8510 1.0824 5 8 2.2884 1.3864 2.3514 6 6 3.0903 3.1689 0.7254 7 6 3.4134 3.0540 -0.7822 8 6 2.3727 2.0071 -1.2428 9 1 1.4785 2.5009 -1.6230 10 6 2.9648 1.1101 -2.2992 11 1 3.9757 1.2740 -2.6422 12 6 2.2180 0.0767 -2.8238 13 7 0.9870 -0.1229 -2.4062 14 14 2.9545 -1.0399 -4.1278 15 1 3.6278 -2.1896 -3.4720 16 1 1.8762 -1.5397 -5.0179 17 1 3.9451 -0.2779 -4.9298 18 1 -0.3635 0.5615 0.8606 19 1 -0.3633 0.4646 -0.9167 20 1 -0.3634 -1.0261 0.0559 21 1 1.7867 0.5619 2.4101 22 1 4.0056 3.3101 1.3000 23 1 2.4000 3.9934 0.9038 24 1 4.4293 2.6908 -0.9375 25 1 3.2594 4.0066 -1.2892 26 1 0.4616 -0.8501 -2.7750 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100206571.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:22 Heat of formation + Delta-G solvation = -78.763585 kcal Electronic energy + Delta-G solvation = -11720.589030 eV Core-core repulsion = 9571.810052 eV Total energy + Delta-G solvation = -2148.778979 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.57135 -37.58836 -36.88913 -34.27568 -29.61550 -28.94470 -26.74565 -25.57489 -21.54922 -20.87009 -18.78433 -18.31048 -16.81615 -16.42852 -15.91273 -15.20052 -15.11156 -14.33985 -13.97700 -13.84175 -13.43936 -13.08682 -12.79503 -12.43757 -12.35059 -12.02641 -11.83526 -11.47287 -10.98870 -10.46364 -10.02002 -8.58657 -7.93395 -6.07896 1.39553 1.44470 1.47369 1.52951 2.49028 3.04469 3.31213 3.48297 4.19360 4.38973 4.44503 4.58363 4.85414 4.92609 5.05870 5.19981 5.32391 5.36929 5.43994 5.67077 5.73474 5.94110 6.37435 6.76179 6.93862 7.41756 7.56120 9.04964 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.046807 B = 0.017226 C = 0.013925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.057246 B = 1625.016557 C = 2010.270884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 O -0.326 6.326 3 C -0.018 4.018 4 C -0.023 4.023 5 O -0.487 6.487 6 C -0.049 4.049 7 C -0.104 4.104 8 C 0.052 3.948 9 H 0.007 0.993 10 C -0.540 4.540 11 H 0.050 0.950 12 C 0.027 3.973 13 N -0.882 5.882 14 Si 0.949 3.051 15 H -0.286 1.286 16 H -0.283 1.283 17 H -0.271 1.271 18 H 0.021 0.979 19 H 0.052 0.948 20 H 0.076 0.924 21 H 0.396 0.604 22 H 0.084 0.916 23 H 0.092 0.908 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.011 2.801 4.729 5.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 O -0.242 6.242 3 C -0.064 4.064 4 C -0.069 4.069 5 O -0.292 6.292 6 C -0.086 4.086 7 C -0.141 4.141 8 C 0.033 3.967 9 H 0.025 0.975 10 C -0.577 4.577 11 H 0.068 0.932 12 C -0.174 4.174 13 N -0.520 5.520 14 Si 0.775 3.225 15 H -0.212 1.212 16 H -0.208 1.208 17 H -0.196 1.196 18 H 0.039 0.961 19 H 0.070 0.930 20 H 0.094 0.906 21 H 0.248 0.752 22 H 0.103 0.897 23 H 0.110 0.890 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.266 3.032 4.858 5.733 hybrid contribution -0.428 -1.372 -0.873 1.682 sum -0.162 1.660 3.985 4.320 Atomic orbital electron populations 1.22617 0.80170 1.01135 0.99082 1.85835 1.19879 1.24859 1.93653 1.21734 1.01312 0.88456 0.94868 1.21655 1.05961 0.97218 0.82043 1.84612 1.74961 1.44879 1.24789 1.20814 1.00294 0.90981 0.96489 1.22333 0.99088 0.99077 0.93638 1.18558 0.94039 0.92452 0.91661 0.97547 1.21321 0.99647 1.14830 1.21938 0.93202 1.25615 0.95555 0.98272 0.98003 1.70047 1.09234 1.30739 1.41943 0.85721 0.78144 0.79183 0.79413 1.21240 1.20846 1.19578 0.96106 0.92988 0.90574 0.75169 0.89734 0.88988 0.91870 0.89869 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.80 9.88 113.37 1.12 3.92 15 2 O -0.33 -16.51 8.13 -87.96 -0.71 -17.22 15 3 C -0.02 -0.88 5.52 25.05 0.14 -0.75 15 4 C -0.02 -0.98 7.41 25.05 0.19 -0.80 15 5 O -0.49 -18.52 13.66 -87.88 -1.20 -19.72 15 6 C -0.05 -1.74 6.80 30.52 0.21 -1.53 15 7 C -0.10 -4.16 6.67 31.70 0.21 -3.95 15 8 C 0.05 2.63 2.82 -11.60 -0.03 2.60 15 9 H 0.01 0.37 8.14 -2.39 -0.02 0.35 15 10 C -0.54 -30.33 8.52 25.60 0.22 -30.12 15 11 H 0.05 2.77 7.61 -2.91 -0.02 2.75 15 12 C 0.03 1.49 5.11 84.65 0.43 1.92 15 13 N -0.88 -49.37 8.05 21.45 0.17 -49.20 15 14 Si 0.95 44.59 29.54 68.60 2.03 46.61 15 15 H -0.29 -13.53 7.11 99.48 0.71 -12.82 15 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 18 H 0.02 0.78 8.14 -2.39 -0.02 0.76 15 19 H 0.05 2.52 6.38 -2.39 -0.02 2.51 15 20 H 0.08 2.96 8.14 -2.39 -0.02 2.94 15 21 H 0.40 13.07 8.49 -74.06 -0.63 12.45 15 22 H 0.08 2.65 8.14 -2.39 -0.02 2.63 15 23 H 0.09 2.86 8.14 -2.39 -0.02 2.84 15 24 H 0.06 2.55 7.78 -2.39 -0.02 2.53 15 25 H 0.08 2.90 8.14 -2.39 -0.02 2.88 15 26 H 0.26 13.70 8.31 -92.71 -0.77 12.93 15 Total: -1.00 -62.68 220.85 3.31 -59.37 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.55 Total: 8.86 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 2.48 Total: -28.70 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.17 Total: -49.20 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -1.92 Total: -36.94 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -62.68 3.31 -59.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100206571.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.392 kcal (2) G-P(sol) polarization free energy of solvation -62.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds