Wall clock time and date at job start Mon Mar 30 2020 02:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46381 * 119.33195 * 2 1 4 4 C 1.53243 * 109.15792 * 150.96238 * 3 2 1 5 5 C 1.53240 * 108.56469 * 55.47533 * 4 3 2 6 6 N 1.46383 * 109.15515 * 304.52545 * 5 4 3 7 7 C 1.37184 * 119.33068 * 209.06101 * 6 5 4 8 8 H 1.08000 * 120.00364 * 157.35912 * 7 6 5 9 9 C 1.38883 * 119.99871 * 337.35717 * 7 6 5 10 10 N 1.31476 * 119.99916 * 344.80704 * 9 7 6 11 11 Si 1.86804 * 119.99927 * 164.80270 * 9 7 6 12 12 H 1.48501 * 109.46797 * 90.00158 * 11 9 7 13 13 H 1.48502 * 109.46815 * 209.99950 * 11 9 7 14 14 H 1.48493 * 109.47292 * 330.00269 * 11 9 7 15 15 C 1.34138 * 119.33189 * 180.02562 * 2 1 3 16 16 O 1.21581 * 118.69596 * 0.57670 * 15 2 1 17 17 H 1.09001 * 109.46672 * 90.00383 * 1 2 3 18 18 H 1.08995 * 109.47221 * 209.99998 * 1 2 3 19 19 H 1.09003 * 109.47283 * 330.00894 * 1 2 3 20 20 H 1.09000 * 109.52250 * 31.05400 * 3 2 1 21 21 H 1.09011 * 109.52236 * 270.86026 * 3 2 1 22 22 H 1.09004 * 109.61461 * 295.75449 * 4 3 2 23 23 H 1.08998 * 109.77407 * 175.29365 * 4 3 2 24 24 H 1.09002 * 109.52266 * 64.42455 * 5 4 3 25 25 H 1.08997 * 109.52293 * 184.62029 * 5 4 3 26 26 H 0.97000 * 119.99774 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1820 1.2761 0.0000 4 6 3.5317 1.0946 0.7026 5 6 4.2928 -0.0415 0.0111 6 7 3.4612 -1.2462 0.0105 7 6 4.0636 -2.4786 0.0213 8 1 3.5224 -3.3411 0.3814 9 6 5.3694 -2.6172 -0.4308 10 7 5.9258 -1.6581 -1.1372 11 14 6.3354 -4.1664 -0.0349 12 1 6.1207 -5.1710 -1.1073 13 1 7.7811 -3.8389 0.0544 14 1 5.8722 -4.7206 1.2625 15 6 2.1220 -1.1694 -0.0005 16 8 1.4783 -2.2008 -0.0117 17 1 -0.3633 -0.0001 -1.0277 18 1 -0.3633 -0.8899 0.5138 19 1 -0.3634 0.8901 0.5137 20 1 1.5932 2.0248 0.5299 21 1 2.3470 1.6013 -1.0273 22 1 3.3678 0.8410 1.7500 23 1 4.1094 2.0164 0.6353 24 1 4.5202 0.2446 -1.0158 25 1 5.2200 -0.2391 0.5490 26 1 6.8380 -1.7548 -1.4527 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107117503.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:39 Heat of formation + Delta-G solvation = -35.700127 kcal Electronic energy + Delta-G solvation = -11699.016316 eV Core-core repulsion = 9584.397460 eV Total energy + Delta-G solvation = -2114.618856 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.31232 -37.18446 -36.74714 -33.73488 -31.89358 -28.11874 -27.70564 -25.10170 -23.42610 -20.12836 -18.74505 -18.17582 -17.13405 -16.77582 -16.27439 -15.19691 -15.08002 -14.85962 -14.36068 -13.52855 -13.41976 -13.22125 -12.87473 -12.80650 -12.21088 -12.09867 -11.98683 -11.90058 -10.94470 -10.69345 -9.77607 -9.33503 -8.27802 -5.90075 1.40773 1.40942 1.54739 2.10776 2.39829 2.47468 3.15585 3.46343 4.03762 4.14366 4.32090 4.51883 4.70881 4.72325 4.82167 4.94864 5.00037 5.19375 5.47285 5.51555 5.75761 5.99409 6.38792 6.80121 7.25481 7.67974 8.20719 8.77268 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.060807 B = 0.014770 C = 0.012487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.365362 B = 1895.312982 C = 2241.854265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.644 5.644 3 C 0.118 3.882 4 C -0.150 4.150 5 C 0.149 3.851 6 N -0.484 5.484 7 C -0.330 4.330 8 H 0.067 0.933 9 C -0.010 4.010 10 N -0.906 5.906 11 Si 0.992 3.008 12 H -0.278 1.278 13 H -0.266 1.266 14 H -0.271 1.271 15 C 0.648 3.352 16 O -0.676 6.676 17 H 0.045 0.955 18 H 0.046 0.954 19 H 0.105 0.895 20 H 0.116 0.884 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.124 0.876 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.668 9.026 2.924 9.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.383 5.383 3 C -0.004 4.004 4 C -0.188 4.188 5 C 0.026 3.974 6 N -0.208 5.208 7 C -0.458 4.458 8 H 0.085 0.915 9 C -0.210 4.210 10 N -0.546 5.546 11 Si 0.816 3.184 12 H -0.203 1.203 13 H -0.190 1.190 14 H -0.196 1.196 15 C 0.352 3.648 16 O -0.563 6.563 17 H 0.064 0.936 18 H 0.065 0.935 19 H 0.123 0.877 20 H 0.134 0.866 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.142 0.858 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.779 8.575 2.831 9.448 hybrid contribution 0.555 -0.957 -0.123 1.113 sum -2.224 7.618 2.709 8.386 Atomic orbital electron populations 1.21486 0.77662 1.02947 1.01331 1.46841 1.07354 1.04464 1.79678 1.21711 0.92969 0.84734 1.00978 1.22354 0.96960 1.00049 0.99441 1.21214 0.93167 0.83361 0.99674 1.42834 1.02004 1.07137 1.68822 1.19485 0.97201 0.86991 1.42171 0.91514 1.26063 0.98029 1.02073 0.94856 1.70121 1.15288 1.35130 1.34057 0.84964 0.77442 0.77468 0.78569 1.20341 1.19009 1.19615 1.15995 0.82948 0.83975 0.81928 1.90643 1.66786 1.35113 1.63776 0.93605 0.93502 0.87660 0.86590 0.92107 0.91915 0.85799 0.93652 0.92448 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.51 10.38 127.77 1.33 4.84 15 2 N -0.64 -26.22 3.22 -866.40 -2.79 -29.01 15 3 C 0.12 3.55 6.55 86.48 0.57 4.12 15 4 C -0.15 -4.88 6.20 30.76 0.19 -4.69 15 5 C 0.15 6.94 4.76 86.48 0.41 7.35 15 6 N -0.48 -27.20 2.96 -653.79 -1.94 -29.14 15 7 C -0.33 -20.13 9.17 84.01 0.77 -19.36 15 8 H 0.07 4.35 7.33 -2.91 -0.02 4.33 15 9 C -0.01 -0.56 5.00 84.90 0.42 -0.14 15 10 N -0.91 -50.52 10.78 21.66 0.23 -50.29 15 11 Si 0.99 44.59 29.58 68.60 2.03 46.62 15 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 13 H -0.27 -11.06 7.11 99.48 0.71 -10.36 15 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 15 C 0.65 35.39 7.90 179.45 1.42 36.81 15 16 O -0.68 -42.30 15.19 -3.97 -0.06 -42.36 15 17 H 0.05 1.41 8.14 -2.39 -0.02 1.39 15 18 H 0.05 1.74 7.31 -2.39 -0.02 1.72 15 19 H 0.11 2.31 7.86 -2.39 -0.02 2.29 15 20 H 0.12 2.39 7.86 -2.39 -0.02 2.37 15 21 H 0.06 1.77 8.14 -2.38 -0.02 1.75 15 22 H 0.06 2.09 8.14 -2.38 -0.02 2.07 15 23 H 0.12 2.98 8.14 -2.39 -0.02 2.96 15 24 H 0.05 2.25 7.56 -2.39 -0.02 2.23 15 25 H 0.06 2.84 7.05 -2.39 -0.02 2.82 15 26 H 0.27 14.05 8.31 -92.71 -0.77 13.28 15 Total: -1.00 -75.20 218.86 3.75 -71.46 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: 1.16 Total: 3.79 kcal Atomic # 6 Polarization: 23.83 SS G_CDS: 5.11 Total: 28.94 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -4.49 Total: -108.44 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -0.06 Total: -42.36 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -75.20 3.75 -71.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107117503.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.756 kcal (2) G-P(sol) polarization free energy of solvation -75.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds