Wall clock time and date at job start Mon Mar 30 2020 02:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.48000 * 2 1 4 4 C 1.53093 * 109.47848 * 239.96508 * 2 1 3 5 5 C 1.53178 * 109.16538 * 182.40448 * 4 2 1 6 6 H 1.08997 * 109.61532 * 297.07870 * 5 4 2 7 7 C 1.50697 * 109.54542 * 176.84825 * 5 4 2 8 8 H 1.08008 * 119.99693 * 356.65668 * 7 5 4 9 9 C 1.37870 * 120.00274 * 176.65267 * 7 5 4 10 10 N 1.31526 * 119.99835 * 352.57319 * 9 7 5 11 11 Si 1.86792 * 120.00428 * 172.57054 * 9 7 5 12 12 H 1.48507 * 109.47296 * 265.08825 * 11 9 7 13 13 H 1.48503 * 109.47412 * 145.08818 * 11 9 7 14 14 H 1.48499 * 109.47306 * 25.08821 * 11 9 7 15 15 C 1.53182 * 109.03041 * 56.98690 * 5 4 2 16 16 C 1.53099 * 109.16179 * 303.01903 * 15 5 4 17 17 O 1.42898 * 109.41482 * 57.60958 * 16 15 5 18 18 H 1.08999 * 109.46660 * 299.97415 * 1 2 3 19 19 H 1.08993 * 109.47098 * 59.97129 * 1 2 3 20 20 H 1.08998 * 109.47327 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.47132 * 180.02562 * 3 2 1 22 22 H 1.08998 * 109.47679 * 300.02486 * 3 2 1 23 23 H 1.09000 * 109.47179 * 60.02763 * 3 2 1 24 24 H 1.09008 * 109.52150 * 62.50469 * 4 2 1 25 25 H 1.08992 * 109.52321 * 302.32181 * 4 2 1 26 26 H 0.96998 * 120.00110 * 180.02562 * 10 9 7 27 27 H 1.08996 * 109.52549 * 62.92108 * 15 5 4 28 28 H 1.09002 * 109.51981 * 183.11441 * 15 5 4 29 29 H 1.09002 * 109.47941 * 177.59472 * 16 15 5 30 30 H 1.08999 * 109.47753 * 297.61497 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0405 -0.7224 -1.2495 5 6 3.5711 -0.7710 -1.2122 6 1 3.9702 0.2429 -1.2416 7 6 4.0799 -1.5478 -2.3991 8 1 3.3819 -2.0117 -3.0804 9 6 5.4364 -1.6664 -2.6153 10 7 6.2824 -0.9839 -1.8748 11 14 6.0727 -2.7962 -3.9598 12 1 6.4071 -4.1204 -3.3766 13 1 7.2894 -2.2028 -4.5705 14 1 5.0276 -2.9638 -5.0014 15 6 4.0176 -1.4602 0.0808 16 6 3.4307 -0.7093 1.2790 17 8 2.0066 -0.6742 1.1664 18 1 -0.3632 0.5134 0.8902 19 1 -0.3633 0.5142 -0.8897 20 1 -0.3634 -1.0276 -0.0005 21 1 3.1303 1.4422 -0.0005 22 1 1.6767 1.9565 -0.8897 23 1 1.6774 1.9561 0.8902 24 1 1.7148 -0.1845 -2.1399 25 1 1.6442 -1.7375 -1.2708 26 1 7.2368 -1.0670 -2.0272 27 1 3.6612 -2.4902 0.0865 28 1 5.1059 -1.4499 0.1420 29 1 3.7100 -1.2203 2.2005 30 1 3.8195 0.3088 1.2958 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107398381.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:45 Heat of formation + Delta-G solvation = -69.657632 kcal Electronic energy + Delta-G solvation = -11946.826314 eV Core-core repulsion = 9934.275294 eV Total energy + Delta-G solvation = -2012.551020 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.03247 -33.89208 -32.85655 -31.03114 -27.60059 -26.74680 -25.03948 -22.34966 -20.55934 -18.15581 -16.39237 -15.38976 -14.91158 -14.37973 -13.94057 -13.49189 -12.90006 -12.29899 -12.13272 -11.84368 -11.63982 -11.38976 -10.99625 -10.87194 -10.68177 -10.42432 -10.17778 -10.08533 -9.58274 -9.11023 -8.91999 -8.32051 -8.24989 -6.01042 -4.03426 3.30400 3.37621 3.40846 4.44167 4.50178 5.30395 5.47636 5.52017 5.73524 5.98051 6.06427 6.13500 6.22370 6.28336 6.33349 6.45527 6.49924 6.59734 6.65597 6.86604 7.05226 7.16197 7.39627 7.67217 7.93716 7.99914 8.14763 8.45167 9.00136 9.60196 11.07421 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.063145 B = 0.012371 C = 0.011576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.316978 B = 2262.800036 C = 2418.146841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.108 3.892 3 C -0.175 4.175 4 C -0.129 4.129 5 C 0.046 3.954 6 H 0.034 0.966 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.062 3.938 10 N -0.891 5.891 11 Si 0.888 3.112 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C -0.139 4.139 16 C 0.057 3.943 17 O -0.388 6.388 18 H 0.053 0.947 19 H 0.064 0.936 20 H 0.057 0.943 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.260 0.740 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.422 2.194 3.439 7.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.069 3.931 3 C -0.232 4.232 4 C -0.166 4.166 5 C 0.028 3.972 6 H 0.052 0.948 7 C -0.551 4.551 8 H 0.073 0.927 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.716 3.284 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.177 4.177 16 C -0.019 4.019 17 O -0.308 6.308 18 H 0.072 0.928 19 H 0.083 0.917 20 H 0.077 0.923 21 H 0.089 0.911 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.354 2.149 3.589 7.607 hybrid contribution 0.740 -0.551 -0.919 1.302 sum -5.614 1.597 2.670 6.418 Atomic orbital electron populations 1.21737 0.93972 1.02055 1.01340 1.21498 0.93339 0.91244 0.87011 1.22404 1.02985 0.96709 1.01108 1.22232 1.00084 0.99256 0.95071 1.18730 0.88616 0.96905 0.92981 0.94798 1.21197 0.91518 1.32765 1.09619 0.92732 1.24965 0.97074 0.95603 0.96254 1.69946 1.02261 1.40361 1.40399 0.86646 0.78432 0.81170 0.82160 1.20741 1.21314 1.19915 1.22176 1.02311 0.98405 0.94835 1.22694 0.80551 0.99492 0.99180 1.87788 1.21998 1.77759 1.43248 0.92814 0.91728 0.92343 0.91139 0.92201 0.93192 0.92731 0.92703 0.93073 0.93726 0.89895 0.90918 0.93952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.85 37.16 0.33 -1.75 16 2 C 0.11 2.05 1.11 -90.57 -0.10 1.95 16 3 C -0.17 -3.06 7.94 37.15 0.29 -2.77 16 4 C -0.13 -2.78 4.15 -26.59 -0.11 -2.89 16 5 C 0.05 1.16 1.76 -91.59 -0.16 0.99 16 6 H 0.03 0.92 6.62 -51.93 -0.34 0.57 16 7 C -0.51 -14.25 8.51 -34.44 -0.29 -14.54 16 8 H 0.05 1.51 7.76 -52.48 -0.41 1.10 16 9 C 0.06 1.74 5.25 -17.82 -0.09 1.64 16 10 N -0.89 -25.58 11.98 55.43 0.66 -24.92 16 11 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 C -0.14 -3.33 5.20 -26.59 -0.14 -3.46 16 16 C 0.06 1.17 6.51 37.21 0.24 1.41 16 17 O -0.39 -7.96 10.24 -35.23 -0.36 -8.32 16 18 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 19 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 20 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.07 1.36 4.98 -51.92 -0.26 1.10 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 1.13 8.14 -51.92 -0.42 0.71 16 25 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.08 2.16 6.77 -51.93 -0.35 1.80 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.04 0.85 6.34 -51.93 -0.33 0.52 16 LS Contribution 236.41 15.07 3.56 3.56 Total: -1.00 -28.72 236.41 -5.82 -34.54 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -4.63 Total: -1.86 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -0.03 Total: -19.41 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.66 Total: -24.92 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.36 Total: -8.32 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.72 -5.82 -34.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107398381.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.119 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds