Wall clock time and date at job start Mon Mar 30 2020 02:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.48328 * 2 1 4 4 C 1.53098 * 109.48080 * 239.96114 * 2 1 3 5 5 C 1.53171 * 109.16245 * 297.63029 * 4 2 1 6 6 H 1.09003 * 109.62196 * 62.92979 * 5 4 2 7 7 C 1.50708 * 109.54218 * 183.15047 * 5 4 2 8 8 H 1.07991 * 119.99789 * 359.55955 * 7 5 4 9 9 C 1.37877 * 120.00008 * 179.55266 * 7 5 4 10 10 N 1.31514 * 120.00089 * 180.02562 * 9 7 5 11 11 Si 1.86798 * 119.99938 * 0.02562 * 9 7 5 12 12 H 1.48506 * 109.47297 * 269.99556 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99737 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99730 * 11 9 7 15 15 C 1.53182 * 109.03862 * 303.01320 * 5 4 2 16 16 C 1.53097 * 109.15617 * 56.98312 * 15 5 4 17 17 O 1.42894 * 109.41608 * 302.38841 * 16 15 5 18 18 H 1.09007 * 109.47215 * 299.98228 * 1 2 3 19 19 H 1.09004 * 109.47277 * 59.97898 * 1 2 3 20 20 H 1.08996 * 109.47775 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47122 * 180.02562 * 3 2 1 22 22 H 1.08999 * 109.47077 * 300.01955 * 3 2 1 23 23 H 1.08994 * 109.47096 * 60.02348 * 3 2 1 24 24 H 1.09005 * 109.52005 * 177.72059 * 4 2 1 25 25 H 1.09000 * 109.51541 * 57.53626 * 4 2 1 26 26 H 0.96997 * 119.99848 * 180.02562 * 10 9 7 27 27 H 1.08998 * 109.52450 * 176.88628 * 15 5 4 28 28 H 1.08997 * 109.52099 * 297.08323 * 15 5 4 29 29 H 1.08998 * 109.48080 * 62.37477 * 16 15 5 30 30 H 1.09005 * 109.47385 * 182.40608 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0405 -0.7225 -1.2495 5 6 1.5756 -2.1815 -1.2118 6 1 0.4866 -2.2195 -1.2413 7 6 2.1380 -2.9206 -2.3987 8 1 2.7588 -2.4011 -3.1136 9 6 1.8601 -4.2599 -2.5718 10 7 2.3513 -4.9050 -3.6072 11 14 0.7859 -5.1582 -1.3355 12 1 1.6382 -5.7287 -0.2615 13 1 0.0530 -6.2534 -2.0201 14 1 -0.1876 -4.2067 -0.7420 15 6 2.0764 -2.8323 0.0813 16 6 1.5644 -2.0283 1.2793 17 8 2.0065 -0.6741 1.1665 18 1 -0.3634 0.5136 0.8902 19 1 -0.3634 0.5142 -0.8898 20 1 -0.3634 -1.0276 -0.0005 21 1 3.1303 1.4422 -0.0005 22 1 1.6767 1.9564 -0.8898 23 1 1.6774 1.9561 0.8901 24 1 3.1298 -0.6876 -1.2708 25 1 1.6420 -0.2360 -2.1398 26 1 2.1555 -5.8471 -3.7291 27 1 1.7035 -3.8547 0.1426 28 1 3.1663 -2.8400 0.0867 29 1 0.4749 -2.0548 1.2960 30 1 1.9529 -2.4620 2.2008 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107398382.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:47 Heat of formation + Delta-G solvation = -80.620095 kcal Electronic energy + Delta-G solvation = -12038.366340 eV Core-core repulsion = 10025.339952 eV Total energy + Delta-G solvation = -2013.026388 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.82137 -35.94571 -34.45870 -33.57243 -29.42717 -28.14893 -27.25958 -24.12603 -22.29133 -19.99878 -18.89449 -17.24000 -16.97294 -15.97859 -15.69266 -15.46471 -14.94871 -14.33836 -13.92560 -13.43804 -13.21769 -13.00111 -12.90281 -12.64879 -12.44716 -12.20879 -11.86778 -11.75617 -11.57472 -11.14701 -10.75644 -10.69730 -10.12131 -8.32587 -6.36450 1.27108 1.32236 1.43146 2.29713 2.90971 3.02373 3.93607 4.01213 4.15503 4.20061 4.30740 4.41359 4.61325 4.67770 4.73530 4.86039 4.87947 4.94263 5.05533 5.14299 5.16423 5.25354 5.42553 5.47086 5.66801 5.72810 6.27988 6.41803 6.70241 7.28757 8.84575 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.056383 B = 0.014893 C = 0.013380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.485326 B = 1879.619800 C = 2092.125554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.102 3.898 3 C -0.130 4.130 4 C -0.117 4.117 5 C 0.011 3.989 6 H 0.031 0.969 7 C -0.521 4.521 8 H 0.029 0.971 9 C 0.009 3.991 10 N -0.951 5.951 11 Si 0.950 3.050 12 H -0.265 1.265 13 H -0.298 1.298 14 H -0.243 1.243 15 C -0.157 4.157 16 C 0.061 3.939 17 O -0.387 6.387 18 H 0.076 0.924 19 H 0.075 0.925 20 H 0.050 0.950 21 H 0.055 0.945 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.266 0.734 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 8.604 10.386 14.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.063 3.937 3 C -0.187 4.187 4 C -0.155 4.155 5 C -0.008 4.008 6 H 0.049 0.951 7 C -0.559 4.559 8 H 0.048 0.952 9 C -0.188 4.188 10 N -0.592 5.592 11 Si 0.776 3.224 12 H -0.191 1.191 13 H -0.225 1.225 14 H -0.167 1.167 15 C -0.194 4.194 16 C -0.015 4.015 17 O -0.307 6.307 18 H 0.094 0.906 19 H 0.094 0.906 20 H 0.069 0.931 21 H 0.074 0.926 22 H 0.102 0.898 23 H 0.093 0.907 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.691 8.555 10.430 14.281 hybrid contribution -0.141 -1.171 -0.445 1.260 sum -4.832 7.384 9.985 13.325 Atomic orbital electron populations 1.22397 0.94912 1.02380 1.03401 1.21725 0.94005 0.93333 0.84621 1.21733 1.01499 0.92095 1.03384 1.22020 0.99924 0.95876 0.97668 1.19187 0.96043 0.93462 0.92070 0.95081 1.21403 1.30837 0.95067 1.08552 0.95239 1.25939 0.97047 0.98503 0.97308 1.70059 1.47315 1.10506 1.31314 0.85822 0.79685 0.78143 0.78726 1.19101 1.22527 1.16671 1.22538 1.01064 0.98714 0.97127 1.22649 0.98961 0.81973 0.97931 1.87844 1.74551 1.24717 1.43544 0.90550 0.90601 0.93079 0.92581 0.89806 0.90714 0.93690 0.91922 0.92559 0.93504 0.92916 0.92371 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.92 7.93 71.98 0.57 -4.35 16 2 C 0.10 3.31 1.11 -10.76 -0.01 3.30 16 3 C -0.13 -3.34 8.85 71.98 0.64 -2.70 16 4 C -0.12 -4.73 4.15 30.68 0.13 -4.60 16 5 C 0.01 0.52 1.46 -11.42 -0.02 0.50 16 6 H 0.03 1.45 5.70 -2.39 -0.01 1.43 16 7 C -0.52 -30.36 9.15 25.60 0.23 -30.13 16 8 H 0.03 1.91 7.99 -2.92 -0.02 1.88 16 9 C 0.01 0.51 5.45 84.65 0.46 0.97 16 10 N -0.95 -60.52 13.96 21.45 0.30 -60.23 16 11 Si 0.95 45.07 24.34 68.60 1.67 46.74 16 12 H -0.27 -11.94 6.90 99.48 0.69 -11.25 16 13 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 14 H -0.24 -10.50 6.54 99.48 0.65 -9.85 16 15 C -0.16 -6.68 4.86 30.69 0.15 -6.53 16 16 C 0.06 2.08 6.51 72.01 0.47 2.55 16 17 O -0.39 -13.48 10.24 -148.98 -1.52 -15.00 16 18 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 19 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 20 H 0.05 1.59 4.98 -2.39 -0.01 1.58 16 21 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 22 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 25 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 27 H 0.05 2.03 3.37 -2.39 -0.01 2.02 16 28 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.06 1.83 6.34 -2.39 -0.02 1.82 16 30 H 0.11 3.06 8.14 -2.38 -0.02 3.04 16 Total: -1.00 -65.87 228.51 4.09 -61.78 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.03 Total: 7.70 kcal Atomic # 6 Polarization: -43.60 SS G_CDS: 2.62 Total: -40.98 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: 0.30 Total: -60.23 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -1.52 Total: -15.00 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.67 Total: 46.74 kcal Total: -65.87 4.09 -61.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107398382.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.843 kcal (2) G-P(sol) polarization free energy of solvation -65.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds