Wall clock time and date at job start Mon Mar 30 2020 02:16:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86795 * 120.00139 * 2 1
4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1
5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1
6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1
7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3
8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1
9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1
10 10 C 1.53003 * 109.46986 * 300.00234 * 9 7 2
11 11 C 1.53005 * 109.47170 * 299.99721 * 10 9 7
12 12 C 1.52994 * 109.47050 * 300.00695 * 11 10 9
13 13 C 1.53005 * 109.47050 * 180.02562 * 12 11 10
14 14 O 1.42904 * 109.47280 * 64.99610 * 13 12 11
15 15 C 1.52998 * 109.47692 * 59.99291 * 12 11 10
16 16 C 1.52992 * 109.47257 * 180.02562 * 9 7 2
17 17 H 0.97000 * 119.99468 * 359.71811 * 1 2 3
18 18 H 1.08997 * 109.47392 * 59.99705 * 9 7 2
19 19 H 1.08998 * 109.47453 * 59.99968 * 10 9 7
20 20 H 1.08996 * 109.47248 * 180.02562 * 10 9 7
21 21 H 1.08999 * 109.47484 * 179.97438 * 11 10 9
22 22 H 1.09005 * 109.46707 * 59.99911 * 11 10 9
23 23 H 1.09005 * 109.46726 * 299.99205 * 12 11 10
24 24 H 1.08996 * 109.46857 * 184.99567 * 13 12 11
25 25 H 1.09001 * 109.46989 * 304.99165 * 13 12 11
26 26 H 0.96697 * 113.99598 * 180.02562 * 14 13 12
27 27 H 1.08998 * 109.46987 * 179.97438 * 15 12 11
28 28 H 1.09005 * 109.46648 * 60.00420 * 15 12 11
29 29 H 1.08996 * 109.47365 * 179.97438 * 16 9 7
30 30 H 1.09004 * 109.47330 * 299.99977 * 16 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4909 2.0497 -1.4001
5 1 1.4497 2.6509 0.7059
6 1 3.5497 1.4383 0.6942
7 6 2.0046 -1.1941 -0.0058
8 1 3.0845 -1.1941 -0.0103
9 6 1.2510 -2.4992 -0.0058
10 6 0.3766 -2.5832 1.2469
11 6 1.2614 -2.5053 2.4927
12 6 2.2557 -3.6681 2.4856
13 6 3.1401 -3.5905 3.7318
14 8 2.3379 -3.7860 4.8982
15 6 3.1300 -3.5842 1.2329
16 6 2.2452 -3.6621 -0.0122
17 1 -0.4849 0.8401 0.0041
18 1 0.6206 -2.5548 -0.8933
19 1 -0.3317 -1.7548 1.2519
20 1 -0.1681 -3.5274 1.2471
21 1 0.6385 -2.5647 3.3852
22 1 1.8065 -1.5613 2.4926
23 1 1.7106 -4.6121 2.4857
24 1 3.9052 -4.3653 3.6830
25 1 3.6169 -2.6115 3.7785
26 1 2.8341 -3.7491 5.7273
27 1 3.8386 -4.4124 1.2282
28 1 3.6751 -2.6402 1.2330
29 1 1.7002 -4.6061 -0.0117
30 1 2.8685 -3.6025 -0.9044
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000115097544.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:16:39
Heat of formation + Delta-G solvation = -81.636721 kcal
Electronic energy + Delta-G solvation = -11851.353295 eV
Core-core repulsion = 9838.282822 eV
Total energy + Delta-G solvation = -2013.070473 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 184.120 amu
Computer time = 0.13 seconds
Orbital eigenvalues (eV)
-38.13555 -35.96339 -32.62425 -30.24047 -29.42370 -25.59006 -23.85262 -21.40474
-20.06284 -18.63665 -16.92833 -15.66998 -14.78434 -14.30790 -14.25709 -13.36719
-12.98660 -12.67450 -11.95736 -11.47543 -11.16650 -10.98261 -10.84670 -10.69272
-10.54529 -10.06966 -9.93958 -9.72768 -9.40347 -9.00834 -8.75124 -8.50944
-8.17051 -5.89767 -3.93846 3.33419 3.40623 3.42651 4.49378 4.64012
5.40480 5.47431 5.59284 5.75627 6.01219 6.02479 6.31311 6.50270
6.62459 6.67998 6.76892 6.87266 6.94057 7.01054 7.19548 7.31259
7.60353 7.69855 7.83214 7.93301 8.03787 8.26129 8.57023 9.08544
9.68630 11.16300
Molecular weight = 184.12amu
Principal moments of inertia in cm(-1)
A = 0.042900 B = 0.013896 C = 0.012892
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 652.523224 B = 2014.420646 C = 2171.285991
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.891 5.891
2 C 0.060 3.940
3 Si 0.884 3.116
4 H -0.282 1.282
5 H -0.288 1.288
6 H -0.276 1.276
7 C -0.500 4.500
8 H 0.054 0.946
9 C 0.042 3.958
10 C -0.109 4.109
11 C -0.090 4.090
12 C -0.081 4.081
13 C 0.080 3.920
14 O -0.572 6.572
15 C -0.100 4.100
16 C -0.105 4.105
17 H 0.258 0.742
18 H 0.023 0.977
19 H 0.089 0.911
20 H 0.012 0.988
21 H 0.037 0.963
22 H 0.066 0.934
23 H 0.060 0.940
24 H 0.034 0.966
25 H 0.044 0.956
26 H 0.368 0.632
27 H 0.035 0.965
28 H 0.070 0.930
29 H 0.033 0.967
30 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.193 -5.143 5.465 9.126
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.530 5.530
2 C -0.141 4.141
3 Si 0.712 3.288
4 H -0.209 1.209
5 H -0.214 1.214
6 H -0.201 1.201
7 C -0.538 4.538
8 H 0.072 0.928
9 C 0.024 3.976
10 C -0.147 4.147
11 C -0.128 4.128
12 C -0.099 4.099
13 C 0.002 3.998
14 O -0.376 6.376
15 C -0.137 4.137
16 C -0.143 4.143
17 H 0.068 0.932
18 H 0.041 0.959
19 H 0.107 0.893
20 H 0.031 0.969
21 H 0.056 0.944
22 H 0.085 0.915
23 H 0.078 0.922
24 H 0.052 0.948
25 H 0.062 0.938
26 H 0.214 0.786
27 H 0.054 0.946
28 H 0.088 0.912
29 H 0.052 0.948
30 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 4.568 -5.067 5.000 8.458
hybrid contribution 0.975 1.015 0.430 1.472
sum 5.543 -4.052 5.431 8.754
Atomic orbital electron populations
1.69882 1.05817 1.26075 1.51259 1.24947 0.94761 0.98761 0.95584
0.86726 0.79921 0.84168 0.77965 1.20878 1.21374 1.20071 1.21154
0.92651 0.90508 1.49489 0.92777 1.18702 0.92752 0.92028 0.94144
1.21519 0.98739 0.99192 0.95216 1.21323 0.96834 0.97139 0.97488
1.21127 0.96819 1.00198 0.91786 1.22370 0.92960 0.98590 0.85851
1.86539 1.39146 1.95795 1.16161 1.21385 0.97202 1.00678 0.94455
1.21517 0.98221 0.98721 0.95830 0.93216 0.95904 0.89297 0.96922
0.94380 0.91539 0.92161 0.94759 0.93804 0.78644 0.94597 0.91152
0.94841 0.93587
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.71 11.33 55.43 0.63 -25.08 16
2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16
3 Si 0.88 21.38 29.54 -169.99 -5.02 16.35 16
4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16
6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
7 C -0.50 -13.51 6.61 -34.44 -0.23 -13.74 16
8 H 0.05 1.44 6.71 -52.49 -0.35 1.09 16
9 C 0.04 1.06 2.59 -91.77 -0.24 0.83 16
10 C -0.11 -2.67 5.24 -26.73 -0.14 -2.81 16
11 C -0.09 -2.02 4.88 -26.73 -0.13 -2.15 16
12 C -0.08 -1.56 2.43 -90.62 -0.22 -1.78 16
13 C 0.08 1.30 6.43 37.16 0.24 1.53 16
14 O -0.57 -9.07 13.20 -35.23 -0.46 -9.53 16
15 C -0.10 -1.93 4.98 -26.76 -0.13 -2.06 16
16 C -0.11 -2.24 5.41 -26.76 -0.14 -2.39 16
17 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
18 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16
19 H 0.09 2.44 6.08 -51.93 -0.32 2.12 16
20 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16
21 H 0.04 0.84 7.82 -51.93 -0.41 0.43 16
22 H 0.07 1.61 7.22 -51.93 -0.37 1.24 16
23 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16
24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16
25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16
26 H 0.37 3.81 9.12 45.56 0.42 4.23 16
27 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16
28 H 0.07 1.45 6.62 -51.93 -0.34 1.10 16
29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16
30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
LS Contribution 236.25 15.07 3.56 3.56
Total: -1.00 -29.43 236.25 -6.28 -35.71
By element:
Atomic # 1 Polarization: 3.89 SS G_CDS: -3.89 Total: 0.00 kcal
Atomic # 6 Polarization: -19.92 SS G_CDS: -1.09 Total: -21.00 kcal
Atomic # 7 Polarization: -25.71 SS G_CDS: 0.63 Total: -25.08 kcal
Atomic # 8 Polarization: -9.07 SS G_CDS: -0.46 Total: -9.53 kcal
Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal
Total LS contribution 3.56 Total: 3.56 kcal
Total: -29.43 -6.28 -35.71 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000115097544.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.931 kcal
(2) G-P(sol) polarization free energy of solvation -29.425 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.357 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.705 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.637 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds