Wall clock time and date at job start Mon Mar 30 2020 02:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.53003 * 109.46986 * 300.00234 * 9 7 2 11 11 C 1.53005 * 109.47170 * 299.99721 * 10 9 7 12 12 C 1.52994 * 109.47050 * 300.00695 * 11 10 9 13 13 C 1.53005 * 109.47050 * 180.02562 * 12 11 10 14 14 O 1.42904 * 109.47280 * 64.99610 * 13 12 11 15 15 C 1.52998 * 109.47692 * 59.99291 * 12 11 10 16 16 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 17 17 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 18 18 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 19 19 H 1.08998 * 109.47453 * 59.99968 * 10 9 7 20 20 H 1.08996 * 109.47248 * 180.02562 * 10 9 7 21 21 H 1.08999 * 109.47484 * 179.97438 * 11 10 9 22 22 H 1.09005 * 109.46707 * 59.99911 * 11 10 9 23 23 H 1.09005 * 109.46726 * 299.99205 * 12 11 10 24 24 H 1.08996 * 109.46857 * 184.99567 * 13 12 11 25 25 H 1.09001 * 109.46989 * 304.99165 * 13 12 11 26 26 H 0.96697 * 113.99598 * 180.02562 * 14 13 12 27 27 H 1.08998 * 109.46987 * 179.97438 * 15 12 11 28 28 H 1.09005 * 109.46648 * 60.00420 * 15 12 11 29 29 H 1.08996 * 109.47365 * 179.97438 * 16 9 7 30 30 H 1.09004 * 109.47330 * 299.99977 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 0.3766 -2.5832 1.2469 11 6 1.2614 -2.5053 2.4927 12 6 2.2557 -3.6681 2.4856 13 6 3.1401 -3.5905 3.7318 14 8 2.3379 -3.7860 4.8982 15 6 3.1300 -3.5842 1.2329 16 6 2.2452 -3.6621 -0.0122 17 1 -0.4849 0.8401 0.0041 18 1 0.6206 -2.5548 -0.8933 19 1 -0.3317 -1.7548 1.2519 20 1 -0.1681 -3.5274 1.2471 21 1 0.6385 -2.5647 3.3852 22 1 1.8065 -1.5613 2.4926 23 1 1.7106 -4.6121 2.4857 24 1 3.9052 -4.3653 3.6830 25 1 3.6169 -2.6115 3.7785 26 1 2.8341 -3.7491 5.7273 27 1 3.8386 -4.4124 1.2282 28 1 3.6751 -2.6402 1.2330 29 1 1.7002 -4.6061 -0.0117 30 1 2.8685 -3.6025 -0.9044 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115097544.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:39 Heat of formation + Delta-G solvation = -101.388932 kcal Electronic energy + Delta-G solvation = -11852.209815 eV Core-core repulsion = 9838.282822 eV Total energy + Delta-G solvation = -2013.926993 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.77724 -37.33703 -34.56868 -32.00244 -31.21748 -27.45073 -25.56712 -23.15522 -21.70759 -20.48144 -18.21497 -17.63316 -16.67051 -15.99496 -15.71854 -14.92465 -14.73643 -14.57740 -13.50312 -13.32284 -12.91826 -12.83164 -12.63463 -12.43246 -12.40042 -11.86358 -11.60993 -11.43437 -10.89136 -10.80833 -10.64528 -10.41664 -10.20977 -8.01543 -6.12007 1.41388 1.42601 1.51593 2.46640 3.26504 3.47598 4.03032 4.16847 4.30042 4.57045 4.62719 4.74017 4.79756 4.95813 5.00416 5.03516 5.15780 5.17182 5.28727 5.47442 5.56239 5.68778 5.77303 5.80897 5.98907 6.23764 6.47210 6.98677 7.02067 7.53740 9.03762 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.042900 B = 0.013896 C = 0.012892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.523224 B = 2014.420646 C = 2171.285991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.009 3.991 3 Si 0.945 3.055 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.505 4.505 8 H 0.057 0.943 9 C 0.035 3.965 10 C -0.106 4.106 11 C -0.081 4.081 12 C -0.080 4.080 13 C 0.086 3.914 14 O -0.592 6.592 15 C -0.094 4.094 16 C -0.102 4.102 17 H 0.256 0.744 18 H -0.014 1.014 19 H 0.053 0.947 20 H 0.020 0.980 21 H 0.036 0.964 22 H 0.043 0.957 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.393 0.607 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.070 -5.905 6.362 11.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.771 3.229 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.017 3.983 10 C -0.144 4.144 11 C -0.119 4.119 12 C -0.098 4.098 13 C 0.008 3.992 14 O -0.400 6.400 15 C -0.131 4.131 16 C -0.140 4.140 17 H 0.065 0.935 18 H 0.004 0.996 19 H 0.072 0.928 20 H 0.039 0.961 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.242 0.758 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.468 -5.837 5.913 10.530 hybrid contribution 0.336 1.221 0.147 1.274 sum 6.804 -4.616 6.060 10.214 Atomic orbital electron populations 1.70042 1.07267 1.26624 1.52370 1.25704 0.95490 1.02130 0.95550 0.85756 0.78985 0.80145 0.78018 1.20476 1.21495 1.18923 1.21435 0.92854 0.91365 1.48648 0.92467 1.18717 0.93308 0.93519 0.92774 1.21405 0.98550 0.98076 0.96357 1.21171 0.97013 0.97720 0.95952 1.21080 0.96586 0.98372 0.93810 1.22218 0.92531 0.99785 0.84651 1.86469 1.40330 1.95808 1.17367 1.21319 0.97161 1.01488 0.93127 1.21445 0.97753 0.97374 0.97429 0.93468 0.99610 0.92848 0.96105 0.94566 0.93867 0.91962 0.91580 0.93856 0.75775 0.90808 0.92539 0.93417 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.71 11.33 21.45 0.24 -54.47 16 2 C 0.01 0.49 5.30 84.66 0.45 0.94 16 3 Si 0.94 44.02 29.54 68.60 2.03 46.04 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.50 -27.44 6.61 25.60 0.17 -27.27 16 8 H 0.06 3.02 6.71 -2.91 -0.02 3.00 16 9 C 0.04 1.80 2.59 -11.54 -0.03 1.77 16 10 C -0.11 -5.29 5.24 30.60 0.16 -5.13 16 11 C -0.08 -3.59 4.88 30.59 0.15 -3.44 16 12 C -0.08 -2.89 2.43 -10.79 -0.03 -2.91 16 13 C 0.09 2.48 6.43 71.98 0.46 2.94 16 14 O -0.59 -16.90 13.20 -148.98 -1.97 -18.87 16 15 C -0.09 -3.34 4.98 30.58 0.15 -3.19 16 16 C -0.10 -4.21 5.41 30.57 0.17 -4.04 16 17 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 18 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 19 H 0.05 3.04 6.08 -2.39 -0.01 3.02 16 20 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 21 H 0.04 1.58 7.82 -2.39 -0.02 1.56 16 22 H 0.04 2.09 7.22 -2.38 -0.02 2.07 16 23 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.39 6.78 9.12 -74.06 -0.68 6.10 16 27 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.06 2.18 6.62 -2.38 -0.02 2.17 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -63.22 236.25 2.39 -60.83 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 0.43 Total: 6.80 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 1.65 Total: -40.34 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.24 Total: -54.47 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -1.97 Total: -18.87 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -63.22 2.39 -60.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115097544.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.560 kcal (2) G-P(sol) polarization free energy of solvation -63.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds