Wall clock time and date at job start Mon Mar 30 2020 02:16:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86795 * 120.00139 * 2 1
4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1
5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1
6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1
7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3
8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1
9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1
10 10 C 1.53003 * 109.46986 * 300.00234 * 9 7 2
11 11 C 1.53005 * 109.47170 * 299.99721 * 10 9 7
12 12 C 1.52994 * 109.47050 * 300.00695 * 11 10 9
13 13 C 1.53005 * 109.47050 * 180.02562 * 12 11 10
14 14 O 1.42904 * 109.47280 * 64.99610 * 13 12 11
15 15 C 1.52998 * 109.47692 * 59.99291 * 12 11 10
16 16 C 1.52992 * 109.47257 * 180.02562 * 9 7 2
17 17 H 0.97000 * 119.99468 * 359.71811 * 1 2 3
18 18 H 1.08997 * 109.47392 * 59.99705 * 9 7 2
19 19 H 1.08998 * 109.47453 * 59.99968 * 10 9 7
20 20 H 1.08996 * 109.47248 * 180.02562 * 10 9 7
21 21 H 1.08999 * 109.47484 * 179.97438 * 11 10 9
22 22 H 1.09005 * 109.46707 * 59.99911 * 11 10 9
23 23 H 1.09005 * 109.46726 * 299.99205 * 12 11 10
24 24 H 1.08996 * 109.46857 * 184.99567 * 13 12 11
25 25 H 1.09001 * 109.46989 * 304.99165 * 13 12 11
26 26 H 0.96697 * 113.99598 * 180.02562 * 14 13 12
27 27 H 1.08998 * 109.46987 * 179.97438 * 15 12 11
28 28 H 1.09005 * 109.46648 * 60.00420 * 15 12 11
29 29 H 1.08996 * 109.47365 * 179.97438 * 16 9 7
30 30 H 1.09004 * 109.47330 * 299.99977 * 16 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4909 2.0497 -1.4001
5 1 1.4497 2.6509 0.7059
6 1 3.5497 1.4383 0.6942
7 6 2.0046 -1.1941 -0.0058
8 1 3.0845 -1.1941 -0.0103
9 6 1.2510 -2.4992 -0.0058
10 6 0.3766 -2.5832 1.2469
11 6 1.2614 -2.5053 2.4927
12 6 2.2557 -3.6681 2.4856
13 6 3.1401 -3.5905 3.7318
14 8 2.3379 -3.7860 4.8982
15 6 3.1300 -3.5842 1.2329
16 6 2.2452 -3.6621 -0.0122
17 1 -0.4849 0.8401 0.0041
18 1 0.6206 -2.5548 -0.8933
19 1 -0.3317 -1.7548 1.2519
20 1 -0.1681 -3.5274 1.2471
21 1 0.6385 -2.5647 3.3852
22 1 1.8065 -1.5613 2.4926
23 1 1.7106 -4.6121 2.4857
24 1 3.9052 -4.3653 3.6830
25 1 3.6169 -2.6115 3.7785
26 1 2.8341 -3.7491 5.7273
27 1 3.8386 -4.4124 1.2282
28 1 3.6751 -2.6402 1.2330
29 1 1.7002 -4.6061 -0.0117
30 1 2.8685 -3.6025 -0.9044
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000115097544.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:16:39
Heat of formation + Delta-G solvation = -101.388932 kcal
Electronic energy + Delta-G solvation = -11852.209815 eV
Core-core repulsion = 9838.282822 eV
Total energy + Delta-G solvation = -2013.926993 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 184.120 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-39.77724 -37.33703 -34.56868 -32.00244 -31.21748 -27.45073 -25.56712 -23.15522
-21.70759 -20.48144 -18.21497 -17.63316 -16.67051 -15.99496 -15.71854 -14.92465
-14.73643 -14.57740 -13.50312 -13.32284 -12.91826 -12.83164 -12.63463 -12.43246
-12.40042 -11.86358 -11.60993 -11.43437 -10.89136 -10.80833 -10.64528 -10.41664
-10.20977 -8.01543 -6.12007 1.41388 1.42601 1.51593 2.46640 3.26504
3.47598 4.03032 4.16847 4.30042 4.57045 4.62719 4.74017 4.79756
4.95813 5.00416 5.03516 5.15780 5.17182 5.28727 5.47442 5.56239
5.68778 5.77303 5.80897 5.98907 6.23764 6.47210 6.98677 7.02067
7.53740 9.03762
Molecular weight = 184.12amu
Principal moments of inertia in cm(-1)
A = 0.042900 B = 0.013896 C = 0.012892
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 652.523224 B = 2014.420646 C = 2171.285991
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.922 5.922
2 C 0.009 3.991
3 Si 0.945 3.055
4 H -0.279 1.279
5 H -0.289 1.289
6 H -0.265 1.265
7 C -0.505 4.505
8 H 0.057 0.943
9 C 0.035 3.965
10 C -0.106 4.106
11 C -0.081 4.081
12 C -0.080 4.080
13 C 0.086 3.914
14 O -0.592 6.592
15 C -0.094 4.094
16 C -0.102 4.102
17 H 0.256 0.744
18 H -0.014 1.014
19 H 0.053 0.947
20 H 0.020 0.980
21 H 0.036 0.964
22 H 0.043 0.957
23 H 0.062 0.938
24 H 0.066 0.934
25 H 0.043 0.957
26 H 0.393 0.607
27 H 0.073 0.927
28 H 0.056 0.944
29 H 0.047 0.953
30 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.070 -5.905 6.362 11.195
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.563 5.563
2 C -0.189 4.189
3 Si 0.771 3.229
4 H -0.205 1.205
5 H -0.215 1.215
6 H -0.189 1.189
7 C -0.543 4.543
8 H 0.075 0.925
9 C 0.017 3.983
10 C -0.144 4.144
11 C -0.119 4.119
12 C -0.098 4.098
13 C 0.008 3.992
14 O -0.400 6.400
15 C -0.131 4.131
16 C -0.140 4.140
17 H 0.065 0.935
18 H 0.004 0.996
19 H 0.072 0.928
20 H 0.039 0.961
21 H 0.054 0.946
22 H 0.061 0.939
23 H 0.080 0.920
24 H 0.084 0.916
25 H 0.061 0.939
26 H 0.242 0.758
27 H 0.092 0.908
28 H 0.075 0.925
29 H 0.066 0.934
30 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 6.468 -5.837 5.913 10.530
hybrid contribution 0.336 1.221 0.147 1.274
sum 6.804 -4.616 6.060 10.214
Atomic orbital electron populations
1.70042 1.07267 1.26624 1.52370 1.25704 0.95490 1.02130 0.95550
0.85756 0.78985 0.80145 0.78018 1.20476 1.21495 1.18923 1.21435
0.92854 0.91365 1.48648 0.92467 1.18717 0.93308 0.93519 0.92774
1.21405 0.98550 0.98076 0.96357 1.21171 0.97013 0.97720 0.95952
1.21080 0.96586 0.98372 0.93810 1.22218 0.92531 0.99785 0.84651
1.86469 1.40330 1.95808 1.17367 1.21319 0.97161 1.01488 0.93127
1.21445 0.97753 0.97374 0.97429 0.93468 0.99610 0.92848 0.96105
0.94566 0.93867 0.91962 0.91580 0.93856 0.75775 0.90808 0.92539
0.93417 0.93191
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.71 11.33 21.45 0.24 -54.47 16
2 C 0.01 0.49 5.30 84.66 0.45 0.94 16
3 Si 0.94 44.02 29.54 68.60 2.03 46.04 16
4 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16
5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16
6 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16
7 C -0.50 -27.44 6.61 25.60 0.17 -27.27 16
8 H 0.06 3.02 6.71 -2.91 -0.02 3.00 16
9 C 0.04 1.80 2.59 -11.54 -0.03 1.77 16
10 C -0.11 -5.29 5.24 30.60 0.16 -5.13 16
11 C -0.08 -3.59 4.88 30.59 0.15 -3.44 16
12 C -0.08 -2.89 2.43 -10.79 -0.03 -2.91 16
13 C 0.09 2.48 6.43 71.98 0.46 2.94 16
14 O -0.59 -16.90 13.20 -148.98 -1.97 -18.87 16
15 C -0.09 -3.34 4.98 30.58 0.15 -3.19 16
16 C -0.10 -4.21 5.41 30.57 0.17 -4.04 16
17 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16
18 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16
19 H 0.05 3.04 6.08 -2.39 -0.01 3.02 16
20 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16
21 H 0.04 1.58 7.82 -2.39 -0.02 1.56 16
22 H 0.04 2.09 7.22 -2.38 -0.02 2.07 16
23 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16
24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16
25 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16
26 H 0.39 6.78 9.12 -74.06 -0.68 6.10 16
27 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16
28 H 0.06 2.18 6.62 -2.38 -0.02 2.17 16
29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16
30 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16
Total: -1.00 -63.22 236.25 2.39 -60.83
By element:
Atomic # 1 Polarization: 6.37 SS G_CDS: 0.43 Total: 6.80 kcal
Atomic # 6 Polarization: -41.99 SS G_CDS: 1.65 Total: -40.34 kcal
Atomic # 7 Polarization: -54.71 SS G_CDS: 0.24 Total: -54.47 kcal
Atomic # 8 Polarization: -16.90 SS G_CDS: -1.97 Total: -18.87 kcal
Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal
Total: -63.22 2.39 -60.83 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000115097544.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.560 kcal
(2) G-P(sol) polarization free energy of solvation -63.218 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.778 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.829 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.389 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds