Wall clock time and date at job start Mon Mar 30 2020 01:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.45590 * 2 1 4 4 C 1.54795 * 110.49239 * 237.26669 * 2 1 3 5 5 C 1.54484 * 103.92528 * 241.33817 * 4 2 1 6 6 O 1.44418 * 104.90071 * 24.00274 * 5 4 2 7 7 C 1.44428 * 105.27730 * 319.43393 * 6 5 4 8 8 H 1.08992 * 110.37170 * 281.67756 * 7 6 5 9 9 C 1.50699 * 110.37422 * 159.45259 * 7 6 5 10 10 O 1.21441 * 119.99894 * 346.45541 * 9 7 6 11 11 C 1.41028 * 120.00223 * 166.45471 * 9 7 6 12 12 H 1.08000 * 119.99618 * 359.97438 * 11 9 7 13 13 C 1.40456 * 120.00184 * 180.02562 * 11 9 7 14 14 N 1.30524 * 119.99873 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00141 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46779 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47417 * 119.99965 * 15 13 11 18 18 H 1.48504 * 109.47217 * 240.00244 * 15 13 11 19 19 H 1.08998 * 109.47658 * 297.39288 * 1 2 3 20 20 H 1.08997 * 109.47079 * 57.39622 * 1 2 3 21 21 H 1.09002 * 109.47356 * 177.39655 * 1 2 3 22 22 H 1.08994 * 110.60751 * 122.72286 * 4 2 1 23 23 H 1.09001 * 110.55176 * 359.92266 * 4 2 1 24 24 H 1.09002 * 110.37173 * 265.11623 * 5 4 2 25 25 H 1.08999 * 110.37313 * 142.89045 * 5 4 2 26 26 H 0.97002 * 119.99732 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0212 0.0000 4 6 2.0719 -0.7841 -1.2197 5 6 2.8757 -1.9430 -0.5894 6 8 2.3070 -2.1168 0.7266 7 6 2.0712 -0.7796 1.2189 8 1 3.0022 -0.3352 1.5707 9 6 1.0498 -0.8008 2.3267 10 8 0.3788 -1.7954 2.5149 11 6 0.8731 0.3342 3.1448 12 1 1.4702 1.2185 2.9777 13 6 -0.0785 0.3142 4.1777 14 7 -0.7990 -0.7550 4.3806 15 14 -0.3120 1.8174 5.2618 16 1 0.6200 2.8894 4.8290 17 1 -1.7111 2.3009 5.1431 18 1 -0.0310 1.4571 6.6748 19 1 -0.3634 0.4728 0.9124 20 1 -0.3633 0.5537 -0.8657 21 1 -0.3634 -1.0266 -0.0467 22 1 2.7228 -0.1520 -1.8237 23 1 1.2498 -1.1722 -1.8211 24 1 3.9302 -1.6770 -0.5150 25 1 2.7552 -2.8525 -1.1780 26 1 -1.4565 -0.7687 5.0937 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123865125.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:42 Heat of formation + Delta-G solvation = -96.795265 kcal Electronic energy + Delta-G solvation = -11571.928082 eV Core-core repulsion = 9422.367191 eV Total energy + Delta-G solvation = -2149.560891 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.01904 -36.02081 -32.65756 -32.55755 -29.36161 -27.06810 -25.45422 -22.37823 -20.41348 -18.91463 -16.35865 -15.74462 -15.44943 -14.45774 -14.29701 -13.46431 -13.03266 -12.69378 -12.25876 -11.84191 -11.35005 -11.33743 -10.88074 -10.70422 -10.60779 -10.30708 -10.20475 -10.03451 -9.94263 -8.98767 -8.84740 -7.29016 -6.20373 -4.87636 3.04667 3.14798 3.19319 4.02751 4.21899 4.74379 5.19059 5.31414 5.48873 5.54797 5.78730 5.95807 6.06667 6.13559 6.23900 6.44075 6.56198 6.66456 6.76841 6.88390 7.20868 7.27288 7.63734 8.08471 8.84792 8.89138 10.38208 10.61226 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.066973 B = 0.012913 C = 0.012200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.981108 B = 2167.799882 C = 2294.599530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.075 0.925 4 C -0.152 4.152 5 C 0.039 3.961 6 O -0.353 6.353 7 C 0.033 3.967 8 H 0.061 0.939 9 C 0.380 3.620 10 O -0.524 6.524 11 C -0.534 4.534 12 H 0.070 0.930 13 C 0.083 3.917 14 N -0.740 5.740 15 Si 0.905 3.095 16 H -0.261 1.261 17 H -0.274 1.274 18 H -0.274 1.274 19 H 0.079 0.921 20 H 0.039 0.961 21 H 0.056 0.944 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.679 4.094 -6.328 8.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.093 0.907 4 C -0.190 4.190 5 C -0.039 4.039 6 O -0.272 6.272 7 C -0.026 4.026 8 H 0.079 0.921 9 C 0.272 3.728 10 O -0.410 6.410 11 C -0.566 4.566 12 H 0.088 0.912 13 C -0.140 4.140 14 N -0.369 5.369 15 Si 0.729 3.271 16 H -0.185 1.185 17 H -0.199 1.199 18 H -0.199 1.199 19 H 0.098 0.902 20 H 0.058 0.942 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.184 3.274 -6.060 7.588 hybrid contribution 0.171 1.099 0.273 1.145 sum 3.355 4.373 -5.787 7.991 Atomic orbital electron populations 1.21839 0.93947 1.02261 1.01833 1.22303 0.97569 0.98807 0.93406 0.90707 1.23108 0.99986 0.97600 0.98264 1.23310 0.96206 0.98156 0.86186 1.89265 1.82356 1.26614 1.28942 1.23918 0.99972 0.81971 0.96730 0.92076 1.19231 0.82252 0.88964 0.82357 1.90426 1.45843 1.35105 1.69612 1.20651 1.20175 1.01315 1.14483 0.91220 1.25966 0.94391 0.96535 0.97088 1.69973 1.14999 1.26927 1.25003 0.86352 0.78894 0.81969 0.79900 1.18456 1.19901 1.19890 0.90247 0.94229 0.92441 0.91497 0.91089 0.93440 0.90199 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.11 37.16 0.30 -2.65 15 2 C -0.10 -2.01 3.63 -88.90 -0.32 -2.33 15 3 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 4 C -0.15 -2.48 6.75 -25.01 -0.17 -2.65 15 5 C 0.04 0.69 7.62 37.94 0.29 0.98 15 6 O -0.35 -8.52 10.95 -54.00 -0.59 -9.11 15 7 C 0.03 0.78 3.49 -27.11 -0.09 0.69 15 8 H 0.06 1.36 8.14 -51.93 -0.42 0.94 15 9 C 0.38 10.89 4.35 -33.25 -0.14 10.75 15 10 O -0.52 -17.25 15.13 -13.36 -0.20 -17.45 15 11 C -0.53 -14.79 8.42 -37.69 -0.32 -15.10 15 12 H 0.07 1.77 7.85 -52.49 -0.41 1.36 15 13 C 0.08 2.25 5.50 -17.27 -0.10 2.16 15 14 N -0.74 -21.60 11.72 55.57 0.65 -20.95 15 15 Si 0.90 19.44 29.56 -169.99 -5.03 14.41 15 16 H -0.26 -5.41 7.11 56.52 0.40 -5.01 15 17 H -0.27 -5.74 7.11 56.52 0.40 -5.33 15 18 H -0.27 -5.78 7.11 56.52 0.40 -5.37 15 19 H 0.08 1.86 6.40 -51.93 -0.33 1.53 15 20 H 0.04 0.68 8.14 -51.93 -0.42 0.25 15 21 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 22 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.07 1.11 7.74 -51.93 -0.40 0.71 15 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 25 H 0.08 1.24 8.14 -51.93 -0.42 0.82 15 26 H 0.27 7.12 8.29 -40.82 -0.34 6.78 15 LS Contribution 223.86 15.07 3.37 3.37 Total: -1.00 -33.04 223.86 -5.59 -38.63 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -3.24 Total: -0.75 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -0.55 Total: -8.16 kcal Atomic # 7 Polarization: -21.60 SS G_CDS: 0.65 Total: -20.95 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.79 Total: -26.56 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -33.04 -5.59 -38.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123865125.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.168 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds