Wall clock time and date at job start Mon Mar 30 2020 01:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.45590 * 2 1 4 4 C 1.54795 * 110.49239 * 237.26669 * 2 1 3 5 5 C 1.54484 * 103.92528 * 241.33817 * 4 2 1 6 6 O 1.44418 * 104.90071 * 24.00274 * 5 4 2 7 7 C 1.44428 * 105.27730 * 319.43393 * 6 5 4 8 8 H 1.08992 * 110.37170 * 281.67756 * 7 6 5 9 9 C 1.50699 * 110.37422 * 159.45259 * 7 6 5 10 10 O 1.21441 * 119.99894 * 346.45541 * 9 7 6 11 11 C 1.41028 * 120.00223 * 166.45471 * 9 7 6 12 12 H 1.08000 * 119.99618 * 359.97438 * 11 9 7 13 13 C 1.40456 * 120.00184 * 180.02562 * 11 9 7 14 14 N 1.30524 * 119.99873 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00141 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46779 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47417 * 119.99965 * 15 13 11 18 18 H 1.48504 * 109.47217 * 240.00244 * 15 13 11 19 19 H 1.08998 * 109.47658 * 297.39288 * 1 2 3 20 20 H 1.08997 * 109.47079 * 57.39622 * 1 2 3 21 21 H 1.09002 * 109.47356 * 177.39655 * 1 2 3 22 22 H 1.08994 * 110.60751 * 122.72286 * 4 2 1 23 23 H 1.09001 * 110.55176 * 359.92266 * 4 2 1 24 24 H 1.09002 * 110.37173 * 265.11623 * 5 4 2 25 25 H 1.08999 * 110.37313 * 142.89045 * 5 4 2 26 26 H 0.97002 * 119.99732 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0212 0.0000 4 6 2.0719 -0.7841 -1.2197 5 6 2.8757 -1.9430 -0.5894 6 8 2.3070 -2.1168 0.7266 7 6 2.0712 -0.7796 1.2189 8 1 3.0022 -0.3352 1.5707 9 6 1.0498 -0.8008 2.3267 10 8 0.3788 -1.7954 2.5149 11 6 0.8731 0.3342 3.1448 12 1 1.4702 1.2185 2.9777 13 6 -0.0785 0.3142 4.1777 14 7 -0.7990 -0.7550 4.3806 15 14 -0.3120 1.8174 5.2618 16 1 0.6200 2.8894 4.8290 17 1 -1.7111 2.3009 5.1431 18 1 -0.0310 1.4571 6.6748 19 1 -0.3634 0.4728 0.9124 20 1 -0.3633 0.5537 -0.8657 21 1 -0.3634 -1.0266 -0.0467 22 1 2.7228 -0.1520 -1.8237 23 1 1.2498 -1.1722 -1.8211 24 1 3.9302 -1.6770 -0.5150 25 1 2.7552 -2.8525 -1.1780 26 1 -1.4565 -0.7687 5.0937 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123865125.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:42 Heat of formation + Delta-G solvation = -119.717950 kcal Electronic energy + Delta-G solvation = -11572.922084 eV Core-core repulsion = 9422.367191 eV Total energy + Delta-G solvation = -2150.554893 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.72692 -38.10674 -34.72281 -34.28115 -31.01590 -29.02262 -27.28675 -23.99312 -22.07301 -20.76561 -18.38780 -17.40794 -17.29941 -16.22319 -15.98304 -15.14120 -14.82304 -14.37654 -14.12429 -13.50947 -13.25764 -13.14002 -12.67444 -12.53338 -12.17460 -12.00473 -11.83959 -11.69927 -11.51597 -10.98522 -10.57487 -9.44627 -8.27678 -7.08094 1.34874 1.38600 1.57041 2.18608 2.21586 3.11843 3.47371 3.72328 3.95116 3.99612 4.35731 4.43224 4.57248 4.75571 4.79509 4.84649 4.91007 5.07273 5.16042 5.20612 5.26966 5.50265 5.96811 6.04103 6.72581 6.82687 8.30877 8.53538 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.066973 B = 0.012913 C = 0.012200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.981108 B = 2167.799882 C = 2294.599530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.101 4.101 3 H 0.102 0.898 4 C -0.139 4.139 5 C 0.028 3.972 6 O -0.399 6.399 7 C 0.029 3.971 8 H 0.074 0.926 9 C 0.357 3.643 10 O -0.586 6.586 11 C -0.555 4.555 12 H 0.089 0.911 13 C 0.025 3.975 14 N -0.793 5.793 15 Si 0.995 3.005 16 H -0.243 1.243 17 H -0.264 1.264 18 H -0.267 1.267 19 H 0.044 0.956 20 H 0.079 0.921 21 H 0.023 0.977 22 H 0.110 0.890 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.741 6.396 -7.307 10.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.120 4.120 3 H 0.121 0.879 4 C -0.177 4.177 5 C -0.048 4.048 6 O -0.319 6.319 7 C -0.029 4.029 8 H 0.091 0.909 9 C 0.254 3.746 10 O -0.477 6.477 11 C -0.586 4.586 12 H 0.107 0.893 13 C -0.193 4.193 14 N -0.422 5.422 15 Si 0.813 3.187 16 H -0.166 1.166 17 H -0.189 1.189 18 H -0.191 1.191 19 H 0.063 0.937 20 H 0.098 0.902 21 H 0.042 0.958 22 H 0.128 0.872 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.115 0.885 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.277 5.589 -7.069 9.975 hybrid contribution -0.141 0.327 0.544 0.650 sum 4.136 5.916 -6.525 9.730 Atomic orbital electron populations 1.21742 0.95367 1.00266 1.01815 1.22366 0.96330 1.00180 0.93089 0.87936 1.23084 1.00562 0.97050 0.96968 1.23683 0.97506 0.99911 0.83686 1.89212 1.83299 1.27108 1.32250 1.23747 0.99043 0.83039 0.97070 0.90872 1.20006 0.82616 0.88401 0.83564 1.90375 1.48588 1.37038 1.71716 1.21156 1.20741 1.01823 1.14871 0.89256 1.27257 0.93293 1.00295 0.98489 1.70127 1.15869 1.30080 1.26104 0.85018 0.79457 0.77023 0.77189 1.16566 1.18898 1.19142 0.93735 0.90206 0.95803 0.87200 0.90612 0.90925 0.88465 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.56 8.11 71.98 0.58 -4.98 15 2 C -0.10 -3.76 3.63 -9.68 -0.04 -3.80 15 3 H 0.10 3.25 8.14 -2.39 -0.02 3.23 15 4 C -0.14 -4.04 6.75 31.71 0.21 -3.82 15 5 C 0.03 0.93 7.62 72.49 0.55 1.49 15 6 O -0.40 -19.34 10.95 -131.03 -1.43 -20.78 15 7 C 0.03 1.40 3.49 30.35 0.11 1.50 15 8 H 0.07 3.21 8.14 -2.39 -0.02 3.19 15 9 C 0.36 21.16 4.35 26.37 0.11 21.28 15 10 O -0.59 -40.70 15.13 14.42 0.22 -40.48 15 11 C -0.55 -31.09 8.42 23.49 0.20 -30.89 15 12 H 0.09 4.47 7.85 -2.91 -0.02 4.45 15 13 C 0.03 1.38 5.50 85.43 0.47 1.85 15 14 N -0.79 -47.85 11.72 21.91 0.26 -47.60 15 15 Si 0.99 39.56 29.56 68.60 2.03 41.58 15 16 H -0.24 -8.87 7.11 99.48 0.71 -8.17 15 17 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 18 H -0.27 -10.23 7.11 99.48 0.71 -9.53 15 19 H 0.04 2.12 6.40 -2.39 -0.02 2.10 15 20 H 0.08 2.57 8.14 -2.39 -0.02 2.55 15 21 H 0.02 1.10 8.14 -2.39 -0.02 1.08 15 22 H 0.11 2.29 8.14 -2.39 -0.02 2.28 15 23 H 0.08 2.13 7.74 -2.39 -0.02 2.11 15 24 H 0.07 2.01 8.14 -2.39 -0.02 1.99 15 25 H 0.10 2.79 8.14 -2.39 -0.02 2.78 15 26 H 0.28 15.11 8.29 -92.71 -0.77 14.35 15 Total: -1.00 -76.02 223.86 4.43 -71.58 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.16 Total: 13.06 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 2.20 Total: -17.38 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.26 Total: -47.60 kcal Atomic # 8 Polarization: -60.04 SS G_CDS: -1.22 Total: -61.26 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.58 kcal Total: -76.02 4.43 -71.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123865125.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.134 kcal (2) G-P(sol) polarization free energy of solvation -76.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds