Wall clock time and date at job start Mon Mar 30 2020 01:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.79946 * 2 1 4 4 C 1.54807 * 110.90457 * 123.62295 * 2 1 3 5 5 C 1.54105 * 104.18504 * 139.11779 * 4 2 1 6 6 O 1.43746 * 107.42259 * 1.95340 * 5 4 2 7 7 C 1.44586 * 106.86832 * 333.67423 * 6 5 4 8 8 H 1.08999 * 110.50225 * 281.37988 * 7 6 5 9 9 C 1.50693 * 110.77488 * 158.50560 * 7 6 5 10 10 O 1.21436 * 119.99978 * 350.72591 * 9 7 6 11 11 C 1.41023 * 119.99996 * 170.71933 * 9 7 6 12 12 H 1.07999 * 120.00017 * 0.02562 * 11 9 7 13 13 C 1.40456 * 120.00207 * 180.02562 * 11 9 7 14 14 N 1.30517 * 120.00177 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00133 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47213 * 60.00332 * 15 13 11 17 17 H 1.48500 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47207 * 299.99974 * 15 13 11 19 19 H 1.08999 * 109.47202 * 297.82888 * 1 2 3 20 20 H 1.08998 * 109.46608 * 57.83027 * 1 2 3 21 21 H 1.09000 * 109.46932 * 177.82773 * 1 2 3 22 22 H 1.08996 * 110.48875 * 20.44048 * 4 2 1 23 23 H 1.09000 * 110.48902 * 257.78922 * 4 2 1 24 24 H 1.09002 * 109.88076 * 121.45430 * 5 4 2 25 25 H 1.08996 * 109.87584 * 242.45546 * 5 4 2 26 26 H 0.97006 * 120.00393 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0824 -0.8008 1.2042 5 6 3.2724 -1.5872 0.6209 6 8 3.3964 -1.2169 -0.7625 7 6 2.0839 -0.8021 -1.2051 8 1 1.4575 -1.6706 -1.4085 9 6 2.1841 0.0757 -2.4258 10 8 3.2682 0.4773 -2.7976 11 6 1.0190 0.4306 -3.1366 12 1 0.0549 0.0737 -2.8058 13 6 1.1124 1.2484 -4.2748 14 7 2.2776 1.6793 -4.6749 15 14 -0.4310 1.7191 -5.2159 16 1 -1.3525 2.4595 -4.3169 17 1 -0.0645 2.5808 -6.3684 18 1 -1.1030 0.4909 -5.7108 19 1 -0.3633 0.4797 0.9088 20 1 -0.3632 0.5472 -0.8699 21 1 -0.3633 -1.0269 -0.0390 22 1 1.3248 -1.4841 1.5878 23 1 2.4203 -0.1245 1.9894 24 1 4.1858 -1.3292 1.1570 25 1 3.0848 -2.6578 0.7026 26 1 2.3421 2.2444 -5.4608 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123865328.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:44 Heat of formation + Delta-G solvation = -99.180230 kcal Electronic energy + Delta-G solvation = -11461.331617 eV Core-core repulsion = 9311.667306 eV Total energy + Delta-G solvation = -2149.664311 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.92629 -36.02751 -32.93653 -32.54790 -29.42850 -27.05981 -25.54621 -22.35496 -20.16432 -19.28429 -16.67817 -15.64768 -15.08670 -14.60130 -14.34030 -13.42242 -13.05601 -12.94832 -12.28323 -11.74630 -11.62759 -11.36566 -11.12369 -10.75372 -10.66363 -10.52452 -10.35573 -10.02474 -9.75543 -8.96565 -8.81730 -7.30028 -6.20825 -4.88889 3.07498 3.13876 3.15637 4.01942 4.21019 4.71921 5.11723 5.23223 5.42891 5.53517 5.81648 5.88644 6.02689 6.05090 6.20914 6.29335 6.36429 6.57055 6.68121 6.80929 6.93976 7.27870 7.67952 8.07092 8.84026 8.89444 10.38194 10.60973 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.059254 B = 0.013412 C = 0.011463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.427664 B = 2087.179613 C = 2441.981414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.081 0.919 4 C -0.153 4.153 5 C 0.042 3.958 6 O -0.358 6.358 7 C 0.039 3.961 8 H 0.064 0.936 9 C 0.372 3.628 10 O -0.526 6.526 11 C -0.531 4.531 12 H 0.072 0.928 13 C 0.082 3.918 14 N -0.740 5.740 15 Si 0.906 3.094 16 H -0.265 1.265 17 H -0.278 1.278 18 H -0.265 1.265 19 H 0.047 0.953 20 H 0.075 0.925 21 H 0.049 0.951 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 -2.661 7.157 9.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 H 0.100 0.900 4 C -0.191 4.191 5 C -0.035 4.035 6 O -0.277 6.277 7 C -0.019 4.019 8 H 0.082 0.918 9 C 0.265 3.735 10 O -0.413 6.413 11 C -0.563 4.563 12 H 0.090 0.910 13 C -0.141 4.141 14 N -0.369 5.369 15 Si 0.730 3.270 16 H -0.189 1.189 17 H -0.203 1.203 18 H -0.190 1.190 19 H 0.066 0.934 20 H 0.094 0.906 21 H 0.068 0.932 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.324 -2.393 6.757 8.371 hybrid contribution -1.073 0.069 -0.117 1.081 sum -5.396 -2.324 6.640 8.866 Atomic orbital electron populations 1.21747 0.94236 1.01547 1.02110 1.22456 0.96325 1.00149 0.93312 0.90031 1.23032 0.98071 0.99260 0.98712 1.23052 0.98018 0.97499 0.84948 1.89060 1.30052 1.85866 1.22720 1.24076 0.83071 0.97165 0.97610 0.91815 1.19345 0.90320 0.81042 0.82837 1.90424 1.30477 1.53150 1.67221 1.20599 0.95231 1.30021 1.10445 0.90967 1.25990 0.96724 0.94383 0.96969 1.69953 1.24712 1.22711 1.19532 0.86446 0.82099 0.79239 0.79205 1.18946 1.20321 1.18951 0.93401 0.90611 0.93161 0.91263 0.91301 0.90983 0.93578 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.00 37.16 0.33 -1.99 15 2 C -0.10 -2.03 3.13 -88.61 -0.28 -2.31 15 3 H 0.08 1.75 8.05 -51.93 -0.42 1.33 15 4 C -0.15 -2.45 6.60 -25.20 -0.17 -2.61 15 5 C 0.04 0.76 7.69 37.73 0.29 1.05 15 6 O -0.36 -8.72 10.85 -53.95 -0.59 -9.31 15 7 C 0.04 0.93 3.10 -26.83 -0.08 0.85 15 8 H 0.06 1.43 8.03 -51.93 -0.42 1.01 15 9 C 0.37 10.83 6.27 -33.26 -0.21 10.62 15 10 O -0.53 -17.70 15.12 -13.30 -0.20 -17.90 15 11 C -0.53 -14.67 8.54 -37.69 -0.32 -14.99 15 12 H 0.07 1.79 6.70 -52.49 -0.35 1.44 15 13 C 0.08 2.25 5.50 -17.28 -0.10 2.15 15 14 N -0.74 -21.79 11.72 55.57 0.65 -21.14 15 15 Si 0.91 19.39 29.56 -169.99 -5.03 14.37 15 16 H -0.26 -5.47 7.11 56.52 0.40 -5.07 15 17 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15 18 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15 19 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 20 H 0.07 1.38 6.43 -51.93 -0.33 1.05 15 21 H 0.05 0.76 8.12 -51.93 -0.42 0.34 15 22 H 0.07 0.95 7.86 -51.93 -0.41 0.54 15 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 24 H 0.07 1.16 8.14 -51.93 -0.42 0.73 15 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 15 26 H 0.27 7.23 8.29 -40.82 -0.34 6.89 15 LS Contribution 224.46 15.07 3.38 3.38 Total: -1.00 -33.48 224.46 -5.48 -38.96 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -3.18 Total: -1.14 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -0.53 Total: -7.23 kcal Atomic # 7 Polarization: -21.79 SS G_CDS: 0.65 Total: -21.14 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.79 Total: -27.20 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -33.48 -5.48 -38.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123865328.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.217 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds