Wall clock time and date at job start Mon Mar 30 2020 01:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.79946 * 2 1 4 4 C 1.54807 * 110.90457 * 123.62295 * 2 1 3 5 5 C 1.54105 * 104.18504 * 139.11779 * 4 2 1 6 6 O 1.43746 * 107.42259 * 1.95340 * 5 4 2 7 7 C 1.44586 * 106.86832 * 333.67423 * 6 5 4 8 8 H 1.08999 * 110.50225 * 281.37988 * 7 6 5 9 9 C 1.50693 * 110.77488 * 158.50560 * 7 6 5 10 10 O 1.21436 * 119.99978 * 350.72591 * 9 7 6 11 11 C 1.41023 * 119.99996 * 170.71933 * 9 7 6 12 12 H 1.07999 * 120.00017 * 0.02562 * 11 9 7 13 13 C 1.40456 * 120.00207 * 180.02562 * 11 9 7 14 14 N 1.30517 * 120.00177 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00133 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47213 * 60.00332 * 15 13 11 17 17 H 1.48500 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47207 * 299.99974 * 15 13 11 19 19 H 1.08999 * 109.47202 * 297.82888 * 1 2 3 20 20 H 1.08998 * 109.46608 * 57.83027 * 1 2 3 21 21 H 1.09000 * 109.46932 * 177.82773 * 1 2 3 22 22 H 1.08996 * 110.48875 * 20.44048 * 4 2 1 23 23 H 1.09000 * 110.48902 * 257.78922 * 4 2 1 24 24 H 1.09002 * 109.88076 * 121.45430 * 5 4 2 25 25 H 1.08996 * 109.87584 * 242.45546 * 5 4 2 26 26 H 0.97006 * 120.00393 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0824 -0.8008 1.2042 5 6 3.2724 -1.5872 0.6209 6 8 3.3964 -1.2169 -0.7625 7 6 2.0839 -0.8021 -1.2051 8 1 1.4575 -1.6706 -1.4085 9 6 2.1841 0.0757 -2.4258 10 8 3.2682 0.4773 -2.7976 11 6 1.0190 0.4306 -3.1366 12 1 0.0549 0.0737 -2.8058 13 6 1.1124 1.2484 -4.2748 14 7 2.2776 1.6793 -4.6749 15 14 -0.4310 1.7191 -5.2159 16 1 -1.3525 2.4595 -4.3169 17 1 -0.0645 2.5808 -6.3684 18 1 -1.1030 0.4909 -5.7108 19 1 -0.3633 0.4797 0.9088 20 1 -0.3632 0.5472 -0.8699 21 1 -0.3633 -1.0269 -0.0390 22 1 1.3248 -1.4841 1.5878 23 1 2.4203 -0.1245 1.9894 24 1 4.1858 -1.3292 1.1570 25 1 3.0848 -2.6578 0.7026 26 1 2.3421 2.2444 -5.4608 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123865328.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:44 Heat of formation + Delta-G solvation = -122.612865 kcal Electronic energy + Delta-G solvation = -11462.347732 eV Core-core repulsion = 9311.667306 eV Total energy + Delta-G solvation = -2150.680426 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.62762 -38.15910 -34.79033 -34.42238 -31.06207 -28.98534 -27.25556 -23.96000 -21.76293 -21.13999 -18.66326 -17.61813 -16.74675 -16.25929 -16.06786 -15.05557 -14.85473 -14.54961 -14.02448 -13.60725 -13.28541 -13.01338 -12.79994 -12.54275 -12.29049 -12.07508 -12.02800 -11.58470 -11.36123 -10.96392 -10.54074 -9.48173 -8.29651 -7.11212 1.38333 1.38551 1.54570 2.15719 2.21102 3.08322 3.40196 3.68127 3.95345 4.04916 4.30976 4.38855 4.63008 4.65715 4.81101 4.86564 4.93501 5.05259 5.16486 5.19456 5.37960 5.47767 5.96643 6.06316 6.70234 6.81225 8.28151 8.51464 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.059254 B = 0.013412 C = 0.011463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.427664 B = 2087.179613 C = 2441.981414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 H 0.050 0.950 4 C -0.138 4.138 5 C 0.030 3.970 6 O -0.405 6.405 7 C 0.038 3.962 8 H 0.077 0.923 9 C 0.341 3.659 10 O -0.593 6.593 11 C -0.548 4.548 12 H 0.098 0.902 13 C 0.022 3.978 14 N -0.794 5.794 15 Si 0.998 3.002 16 H -0.247 1.247 17 H -0.272 1.272 18 H -0.250 1.250 19 H 0.079 0.921 20 H 0.053 0.947 21 H 0.070 0.930 22 H 0.104 0.896 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.832 -3.182 8.321 11.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.122 4.122 3 H 0.068 0.932 4 C -0.176 4.176 5 C -0.047 4.047 6 O -0.325 6.325 7 C -0.020 4.020 8 H 0.095 0.905 9 C 0.239 3.761 10 O -0.486 6.486 11 C -0.579 4.579 12 H 0.116 0.884 13 C -0.197 4.197 14 N -0.423 5.423 15 Si 0.815 3.185 16 H -0.171 1.171 17 H -0.197 1.197 18 H -0.174 1.174 19 H 0.098 0.902 20 H 0.072 0.928 21 H 0.088 0.912 22 H 0.122 0.878 23 H 0.108 0.892 24 H 0.103 0.897 25 H 0.089 0.911 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.980 -2.938 7.959 10.986 hybrid contribution -0.185 0.202 -0.451 0.528 sum -7.165 -2.736 7.508 10.733 Atomic orbital electron populations 1.21715 0.91694 1.02888 1.02722 1.22429 0.98386 0.98296 0.93090 0.93177 1.23009 0.97836 0.99399 0.97317 1.23423 0.99848 0.99323 0.82083 1.89001 1.30694 1.86390 1.26432 1.23867 0.83679 0.97201 0.97223 0.90513 1.20265 0.89928 0.81363 0.84572 1.90369 1.32463 1.56155 1.69568 1.21158 0.95967 1.29978 1.10788 0.88413 1.27365 1.00948 0.93528 0.97845 1.70126 1.28272 1.23466 1.20436 0.85074 0.76472 0.79447 0.77460 1.17072 1.19674 1.17398 0.90240 0.92795 0.91151 0.87790 0.89234 0.89653 0.91103 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 9.00 71.98 0.65 -3.41 15 2 C -0.10 -3.91 3.13 -9.49 -0.03 -3.94 15 3 H 0.05 2.18 8.05 -2.39 -0.02 2.16 15 4 C -0.14 -3.96 6.60 31.58 0.21 -3.75 15 5 C 0.03 1.00 7.69 72.36 0.56 1.56 15 6 O -0.41 -20.03 10.85 -131.08 -1.42 -21.45 15 7 C 0.04 1.84 3.10 30.53 0.09 1.94 15 8 H 0.08 3.39 8.03 -2.39 -0.02 3.38 15 9 C 0.34 20.60 6.27 26.37 0.17 20.77 15 10 O -0.59 -42.24 15.12 14.39 0.22 -42.02 15 11 C -0.55 -30.68 8.54 23.49 0.20 -30.48 15 12 H 0.10 4.77 6.70 -2.91 -0.02 4.76 15 13 C 0.02 1.19 5.50 85.43 0.47 1.66 15 14 N -0.79 -48.34 11.72 21.91 0.26 -48.08 15 15 Si 1.00 39.26 29.56 68.60 2.03 41.28 15 16 H -0.25 -8.98 7.11 99.48 0.71 -8.27 15 17 H -0.27 -10.33 7.11 99.48 0.71 -9.63 15 18 H -0.25 -9.22 7.11 99.48 0.71 -8.51 15 19 H 0.08 1.92 8.14 -2.39 -0.02 1.90 15 20 H 0.05 1.87 6.43 -2.39 -0.02 1.85 15 21 H 0.07 1.86 8.12 -2.39 -0.02 1.84 15 22 H 0.10 2.30 7.86 -2.39 -0.02 2.28 15 23 H 0.09 2.21 8.14 -2.39 -0.02 2.19 15 24 H 0.09 2.59 8.14 -2.39 -0.02 2.57 15 25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 15 26 H 0.28 15.32 8.29 -92.70 -0.77 14.55 15 Total: -1.00 -77.41 224.46 4.56 -72.86 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.16 Total: 13.07 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 2.31 Total: -15.65 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.26 Total: -48.08 kcal Atomic # 8 Polarization: -62.27 SS G_CDS: -1.20 Total: -63.48 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.28 kcal Total: -77.41 4.56 -72.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123865328.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.758 kcal (2) G-P(sol) polarization free energy of solvation -77.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds