Wall clock time and date at job start Mon Mar 30 2020 01:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 110.45471 * 2 1 4 4 C 1.54507 * 110.51087 * 122.60116 * 2 1 3 5 5 C 1.54483 * 104.06211 * 118.78472 * 4 2 1 6 6 O 1.44428 * 104.89902 * 335.96812 * 5 4 2 7 7 C 1.44688 * 105.13885 * 40.49479 * 6 5 4 8 8 H 1.08999 * 110.35366 * 78.36394 * 7 6 5 9 9 C 1.50703 * 110.44641 * 200.63016 * 7 6 5 10 10 O 1.21429 * 120.00105 * 15.46693 * 9 7 6 11 11 C 1.41029 * 119.99868 * 195.47187 * 9 7 6 12 12 H 1.08004 * 119.99708 * 359.97438 * 11 9 7 13 13 C 1.40463 * 119.99968 * 179.97438 * 11 9 7 14 14 N 1.30521 * 119.99994 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 119.99682 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47492 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47079 * 120.00228 * 15 13 11 18 18 H 1.48507 * 109.46733 * 239.99617 * 15 13 11 19 19 H 1.08996 * 109.46853 * 298.84661 * 1 2 3 20 20 H 1.09000 * 109.47068 * 58.85262 * 1 2 3 21 21 H 1.09003 * 109.46751 * 178.85042 * 1 2 3 22 22 H 1.09005 * 110.51421 * 0.14043 * 4 2 1 23 23 H 1.09001 * 110.51335 * 237.42955 * 4 2 1 24 24 H 1.09002 * 110.37322 * 94.85326 * 5 4 2 25 25 H 1.08999 * 110.37312 * 217.08002 * 5 4 2 26 26 H 0.96990 * 119.99978 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0714 -0.7797 1.2191 5 6 2.8788 -1.9393 0.5947 6 8 2.3127 -2.1192 -0.7218 7 6 2.0743 -0.7807 -1.2168 8 1 3.0049 -0.3351 -1.5682 9 6 1.0533 -0.8033 -2.3250 10 8 0.3590 -1.7855 -2.4910 11 6 0.9043 0.3165 -3.1694 12 1 1.5216 1.1902 -3.0215 13 6 -0.0470 0.2953 -4.2026 14 7 -0.7926 -0.7609 -4.3816 15 14 -0.2448 1.7787 -5.3205 16 1 0.7116 2.8383 -4.9109 17 1 0.0287 1.3802 -6.7247 18 1 -1.6324 2.2969 -5.2143 19 1 -0.3633 0.4958 0.9001 20 1 -0.3633 0.5316 -0.8795 21 1 -0.3633 -1.0275 -0.0206 22 1 1.2491 -1.1673 1.8205 23 1 2.7200 -0.1439 1.8218 24 1 3.9328 -1.6714 0.5211 25 1 2.7591 -2.8468 1.1864 26 1 -1.4492 -0.7757 -5.0953 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123865792.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:48 Heat of formation + Delta-G solvation = -119.907202 kcal Electronic energy + Delta-G solvation = -11570.261426 eV Core-core repulsion = 9419.698326 eV Total energy + Delta-G solvation = -2150.563100 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.71706 -38.10333 -34.72167 -34.28808 -30.99950 -29.04836 -27.27920 -24.00042 -22.06815 -20.76112 -18.39767 -17.40845 -17.29158 -16.21973 -15.97301 -15.12531 -14.82860 -14.38641 -14.12435 -13.51019 -13.25762 -13.15710 -12.67335 -12.53200 -12.17425 -12.00373 -11.84641 -11.71375 -11.51360 -10.98491 -10.58103 -9.44509 -8.27718 -7.08414 1.34763 1.38483 1.56950 2.18296 2.21575 3.11155 3.48460 3.72410 3.94733 3.99316 4.35717 4.43323 4.56952 4.75367 4.79054 4.84461 4.90750 5.07145 5.15609 5.20422 5.26632 5.49377 5.96644 6.02896 6.72485 6.82603 8.30894 8.53528 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.067092 B = 0.012854 C = 0.012203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.239135 B = 2177.856810 C = 2293.974080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.101 4.101 3 H 0.102 0.898 4 C -0.139 4.139 5 C 0.029 3.971 6 O -0.399 6.399 7 C 0.029 3.971 8 H 0.074 0.926 9 C 0.357 3.643 10 O -0.585 6.585 11 C -0.556 4.556 12 H 0.089 0.911 13 C 0.025 3.975 14 N -0.792 5.792 15 Si 0.995 3.005 16 H -0.243 1.243 17 H -0.267 1.267 18 H -0.264 1.264 19 H 0.079 0.921 20 H 0.042 0.958 21 H 0.022 0.978 22 H 0.075 0.925 23 H 0.110 0.890 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.837 6.341 7.221 10.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.120 4.120 3 H 0.120 0.880 4 C -0.177 4.177 5 C -0.048 4.048 6 O -0.319 6.319 7 C -0.029 4.029 8 H 0.092 0.908 9 C 0.254 3.746 10 O -0.477 6.477 11 C -0.587 4.587 12 H 0.107 0.893 13 C -0.193 4.193 14 N -0.422 5.422 15 Si 0.813 3.187 16 H -0.166 1.166 17 H -0.191 1.191 18 H -0.189 1.189 19 H 0.098 0.902 20 H 0.061 0.939 21 H 0.041 0.959 22 H 0.094 0.906 23 H 0.128 0.872 24 H 0.091 0.909 25 H 0.115 0.885 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.358 5.541 6.998 9.933 hybrid contribution -0.135 0.327 -0.557 0.660 sum 4.223 5.869 6.441 9.683 Atomic orbital electron populations 1.21715 0.95358 1.00277 1.01644 1.22313 0.96311 1.00197 0.93160 0.87951 1.23038 1.00555 0.97088 0.96996 1.23680 0.97522 0.99867 0.83708 1.89264 1.83391 1.27094 1.32152 1.23791 0.99042 0.83017 0.97050 0.90814 1.19998 0.82759 0.88127 0.83722 1.90370 1.47469 1.37308 1.72506 1.21169 1.20213 1.03077 1.14223 0.89282 1.27257 0.93193 1.00057 0.98819 1.70120 1.15333 1.30102 1.26600 0.85017 0.79519 0.77069 0.77073 1.16582 1.19129 1.18891 0.90185 0.93888 0.95856 0.90610 0.87199 0.90912 0.88466 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.49 8.01 71.98 0.58 -4.91 15 2 C -0.10 -3.77 3.62 -9.78 -0.04 -3.81 15 3 H 0.10 3.25 8.14 -2.38 -0.02 3.23 15 4 C -0.14 -4.04 6.74 31.61 0.21 -3.83 15 5 C 0.03 0.94 7.62 72.49 0.55 1.49 15 6 O -0.40 -19.34 10.99 -131.24 -1.44 -20.79 15 7 C 0.03 1.40 3.50 30.35 0.11 1.50 15 8 H 0.07 3.23 8.14 -2.39 -0.02 3.21 15 9 C 0.36 21.15 4.32 26.37 0.11 21.27 15 10 O -0.58 -40.60 15.04 14.24 0.21 -40.39 15 11 C -0.56 -31.20 8.59 23.50 0.20 -31.00 15 12 H 0.09 4.47 7.85 -2.91 -0.02 4.45 15 13 C 0.03 1.39 5.50 85.43 0.47 1.86 15 14 N -0.79 -47.85 11.72 21.91 0.26 -47.59 15 15 Si 0.99 39.60 29.56 68.60 2.03 41.62 15 16 H -0.24 -8.89 7.11 99.48 0.71 -8.19 15 17 H -0.27 -10.24 7.11 99.48 0.71 -9.53 15 18 H -0.26 -10.04 7.11 99.48 0.71 -9.34 15 19 H 0.08 2.58 8.14 -2.39 -0.02 2.56 15 20 H 0.04 2.02 6.74 -2.39 -0.02 2.00 15 21 H 0.02 1.09 8.00 -2.39 -0.02 1.07 15 22 H 0.08 2.13 7.73 -2.38 -0.02 2.11 15 23 H 0.11 2.30 8.14 -2.39 -0.02 2.28 15 24 H 0.07 2.01 8.14 -2.39 -0.02 1.99 15 25 H 0.10 2.79 8.14 -2.39 -0.02 2.77 15 26 H 0.28 15.12 8.29 -92.72 -0.77 14.35 15 Total: -1.00 -76.02 224.00 4.42 -71.61 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 1.16 Total: 12.97 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 2.20 Total: -17.43 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.26 Total: -47.59 kcal Atomic # 8 Polarization: -59.95 SS G_CDS: -1.23 Total: -61.17 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.62 kcal Total: -76.02 4.42 -71.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123865792.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.301 kcal (2) G-P(sol) polarization free energy of solvation -76.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds