Wall clock time and date at job start Mon Mar 30 2020 01:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31476 * 1 3 3 Si 1.86795 * 120.00157 * 2 1 4 4 H 1.48499 * 109.47152 * 269.99941 * 3 2 1 5 5 H 1.48501 * 109.47179 * 30.00098 * 3 2 1 6 6 H 1.48503 * 109.47208 * 149.99943 * 3 2 1 7 7 C 1.38881 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99995 * 179.97438 * 7 2 1 9 9 N 1.37202 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99760 * 179.97438 * 9 7 2 11 11 O 1.21583 * 120.00265 * 0.02562 * 10 9 7 12 12 N 1.34783 * 119.99511 * 179.97438 * 10 9 7 13 13 C 1.46499 * 119.99531 * 180.02562 * 12 10 9 14 14 C 1.53781 * 113.61225 * 155.00207 * 13 12 10 15 15 C 1.53786 * 87.17350 * 139.93836 * 14 13 12 16 16 C 1.53782 * 113.61191 * 252.49880 * 13 12 10 17 17 H 0.96999 * 119.99767 * 359.97438 * 1 2 3 18 18 H 0.96997 * 119.99443 * 359.97438 * 9 7 2 19 19 H 0.96997 * 119.99692 * 0.02562 * 12 10 9 20 20 H 1.08996 * 112.85385 * 23.80181 * 13 12 10 21 21 H 1.09002 * 113.61445 * 254.52836 * 14 13 12 22 22 H 1.09002 * 113.61408 * 25.34566 * 14 13 12 23 23 H 1.08993 * 113.61491 * 89.15923 * 15 14 13 24 24 H 1.09000 * 113.61138 * 220.06261 * 15 14 13 25 25 H 1.08997 * 113.61668 * 334.56642 * 16 13 12 26 26 H 1.08998 * 113.61674 * 105.39151 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 2.4963 2.0463 -1.4001 5 1 1.4463 2.6526 0.7001 6 1 3.5464 1.4401 0.7001 7 6 2.0091 -1.2028 0.0005 8 1 3.0892 -1.2028 0.0001 9 7 1.3231 -2.3909 0.0005 10 6 1.9970 -3.5581 0.0005 11 8 3.2129 -3.5581 0.0010 12 7 1.3231 -4.7253 0.0011 13 6 2.0556 -5.9940 0.0016 14 6 1.2576 -7.1658 0.5976 15 6 1.8434 -8.0368 -0.5263 16 6 1.9966 -6.7399 -1.3419 17 1 -0.4850 0.8401 0.0004 18 1 0.3532 -2.3908 0.0005 19 1 0.3531 -4.7252 0.0011 20 1 3.0631 -5.9009 0.4069 21 1 1.5891 -7.4577 1.5941 22 1 0.1773 -7.0365 0.5319 23 1 2.7932 -8.5041 -0.2666 24 1 1.1272 -8.7395 -0.9523 25 1 1.1183 -6.4950 -1.9391 26 1 2.9242 -6.6870 -1.9118 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127910649.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:04 Heat of formation + Delta-G solvation = -40.436053 kcal Electronic energy + Delta-G solvation = -10976.406258 eV Core-core repulsion = 8861.582037 eV Total energy + Delta-G solvation = -2114.824221 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.86297 -39.06811 -35.96101 -34.15168 -32.86574 -27.21701 -26.47194 -25.16967 -21.73733 -20.71250 -19.99107 -18.65704 -17.30075 -16.48813 -16.13934 -15.75885 -15.47285 -14.91929 -13.76590 -13.46346 -13.35133 -13.23458 -12.90139 -12.39117 -12.15960 -12.06075 -11.58880 -11.43051 -11.26726 -10.87186 -10.08821 -9.67866 -8.39531 -5.88038 1.42930 1.42939 1.56328 2.20534 2.38004 2.58230 3.29543 3.70134 3.82608 4.03628 4.05388 4.11646 4.76223 4.85594 4.87253 5.10369 5.12311 5.21581 5.39889 5.50044 5.82710 5.91401 6.49570 6.89258 7.18984 7.76876 8.23699 8.80080 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.106100 B = 0.008478 C = 0.008142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 263.837414 B = 3301.710878 C = 3437.981807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.020 4.020 3 Si 0.996 3.004 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.318 4.318 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.654 3.346 11 O -0.671 6.671 12 N -0.733 5.733 13 C 0.124 3.876 14 C -0.135 4.135 15 C -0.121 4.121 16 C -0.158 4.158 17 H 0.274 0.726 18 H 0.394 0.606 19 H 0.402 0.598 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.098 0.902 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.810 -11.690 -0.364 11.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.218 4.218 3 Si 0.820 3.180 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.448 4.448 8 H 0.095 0.905 9 N -0.239 5.239 10 C 0.354 3.646 11 O -0.558 6.558 12 N -0.389 5.389 13 C 0.019 3.981 14 C -0.173 4.173 15 C -0.159 4.159 16 C -0.197 4.197 17 H 0.084 0.916 18 H 0.228 0.772 19 H 0.237 0.763 20 H 0.099 0.901 21 H 0.097 0.903 22 H 0.116 0.884 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.103 0.897 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.876 -11.512 -0.350 11.550 hybrid contribution -0.445 1.014 -0.047 1.109 sum -1.321 -10.498 -0.396 10.588 Atomic orbital electron populations 1.69713 1.06725 1.28880 1.52051 1.25978 0.96637 1.02121 0.97076 0.84882 0.77757 0.76851 0.78531 1.19756 1.19628 1.19800 1.19554 0.92338 0.83282 1.49613 0.90453 1.40985 1.08679 1.03243 1.71038 1.16283 0.85336 0.81575 0.81401 1.90672 1.14158 1.87349 1.63574 1.44900 1.09226 1.03596 1.81165 1.22504 0.96641 0.80794 0.98192 1.23326 1.00715 0.93722 0.99524 1.22658 1.02166 0.95280 0.95778 1.23533 1.02083 0.97129 0.96976 0.91641 0.77186 0.76261 0.90125 0.90292 0.88394 0.89219 0.88852 0.89652 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.14 13.05 21.65 0.28 -51.86 15 2 C -0.02 -1.11 5.50 84.90 0.47 -0.64 15 3 Si 1.00 44.46 29.55 68.60 2.03 46.48 15 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 7 C -0.32 -18.85 9.68 84.01 0.81 -18.04 15 8 H 0.08 4.87 7.16 -2.91 -0.02 4.85 15 9 N -0.60 -32.42 5.29 -320.69 -1.70 -34.12 15 10 C 0.65 33.54 8.52 179.05 1.53 35.07 15 11 O -0.67 -39.91 15.52 -3.98 -0.06 -39.97 15 12 N -0.73 -27.81 5.36 -455.29 -2.44 -30.25 15 13 C 0.12 3.96 4.24 45.52 0.19 4.15 15 14 C -0.13 -2.89 7.83 31.12 0.24 -2.65 15 15 C -0.12 -2.27 8.10 31.18 0.25 -2.02 15 16 C -0.16 -4.14 7.88 31.18 0.25 -3.90 15 17 H 0.27 14.38 8.31 -92.71 -0.77 13.61 15 18 H 0.39 20.24 7.91 -92.71 -0.73 19.51 15 19 H 0.40 12.78 8.74 -92.71 -0.81 11.97 15 20 H 0.08 3.03 7.46 -2.39 -0.02 3.01 15 21 H 0.08 1.58 8.14 -2.39 -0.02 1.56 15 22 H 0.10 1.83 8.12 -2.39 -0.02 1.81 15 23 H 0.09 1.54 8.14 -2.39 -0.02 1.52 15 24 H 0.09 1.36 8.14 -2.39 -0.02 1.34 15 25 H 0.08 2.15 8.14 -2.39 -0.02 2.13 15 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 15 Total: -1.00 -69.66 230.26 1.50 -68.16 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: -0.35 Total: 29.59 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 3.74 Total: 11.97 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -3.86 Total: -116.24 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -0.06 Total: -39.97 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -69.66 1.50 -68.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127910649.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.723 kcal (2) G-P(sol) polarization free energy of solvation -69.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds