Wall clock time and date at job start Mon Mar 30 2020 02:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99867 * 2 1 4 4 H 1.48495 * 109.47048 * 240.00140 * 3 2 1 5 5 H 1.48501 * 109.46850 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46615 * 120.00168 * 3 2 1 7 7 C 1.37873 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00259 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.46923 * 300.00145 * 9 7 2 11 11 C 1.52999 * 109.47130 * 59.99876 * 9 7 2 12 12 O 1.42903 * 109.47256 * 185.00526 * 11 9 7 13 13 C 1.52999 * 109.47366 * 180.02562 * 9 7 2 14 14 C 1.54268 * 110.03276 * 177.16788 * 13 9 7 15 15 C 1.54895 * 104.19144 * 217.10271 * 14 13 9 16 16 C 1.54888 * 102.74979 * 37.93953 * 15 14 13 17 17 C 1.53866 * 110.03373 * 59.99743 * 13 9 7 18 18 H 0.96999 * 120.00393 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.47286 * 65.00087 * 11 9 7 20 20 H 1.09008 * 109.47201 * 304.99867 * 11 9 7 21 21 H 0.96700 * 114.00311 * 180.02562 * 12 11 9 22 22 H 1.09003 * 110.01198 * 298.60263 * 13 9 7 23 23 H 1.08997 * 110.48543 * 335.77820 * 14 13 9 24 24 H 1.08996 * 110.48951 * 98.42473 * 14 13 9 25 25 H 1.08998 * 110.75636 * 279.62385 * 15 14 13 26 26 H 1.09000 * 110.91248 * 156.32977 * 15 14 13 27 27 H 1.08999 * 110.48760 * 203.37232 * 16 15 14 28 28 H 1.09008 * 110.59502 * 80.78888 * 16 15 14 29 29 H 1.09000 * 110.03225 * 238.57122 * 17 13 9 30 30 H 1.09006 * 110.03611 * 359.97438 * 17 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5570 0.8897 11 6 0.3709 -2.5799 -1.2494 12 8 -0.4300 -3.7620 -1.1921 13 6 2.2453 -3.6620 -0.0005 14 6 1.4884 -5.0044 0.0711 15 6 2.3788 -5.8947 0.9732 16 6 2.8914 -4.8957 2.0401 17 6 3.1372 -3.5930 1.2513 18 1 -0.4851 0.8400 0.0004 19 1 1.0022 -2.6114 -2.1374 20 1 -0.2766 -1.7042 -1.2949 21 1 -1.0141 -3.8787 -1.9539 22 1 2.8604 -3.6269 -0.8998 23 1 0.5064 -4.8649 0.5229 24 1 1.3935 -5.4423 -0.9225 25 1 3.2094 -6.3124 0.4044 26 1 1.7925 -6.6880 1.4369 27 1 3.8203 -5.2544 2.4835 28 1 2.1375 -4.7381 2.8115 29 1 4.1853 -3.5252 0.9597 30 1 2.8621 -2.7306 1.8588 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136248055.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:11 Heat of formation + Delta-G solvation = -79.768218 kcal Electronic energy + Delta-G solvation = -11787.218561 eV Core-core repulsion = 9774.229113 eV Total energy + Delta-G solvation = -2012.989448 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.86410 -35.34701 -33.14103 -30.29806 -27.85163 -26.08936 -24.42091 -20.66381 -19.90413 -18.40888 -16.55581 -15.68967 -14.97789 -14.71148 -14.07547 -13.01216 -12.84261 -12.48085 -12.14463 -11.50487 -11.24051 -10.90897 -10.66293 -10.46203 -10.34867 -10.17737 -9.89508 -9.72710 -9.36093 -9.07213 -8.89987 -8.66012 -8.18443 -6.01161 -4.08377 3.30425 3.35276 3.37951 4.41191 5.21916 5.44070 5.49720 5.56225 5.75439 6.20351 6.27241 6.27912 6.45043 6.48156 6.62308 6.73027 6.75081 6.93185 7.00958 7.06651 7.22628 7.32269 7.47251 7.68072 7.96376 8.05606 8.40406 8.83072 8.97628 9.56407 11.03645 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.044684 B = 0.014170 C = 0.011443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.476264 B = 1975.490654 C = 2446.382858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.059 0.941 9 C 0.061 3.939 10 H 0.032 0.968 11 C 0.072 3.928 12 O -0.584 6.584 13 C -0.078 4.078 14 C -0.102 4.102 15 C -0.130 4.130 16 C -0.124 4.124 17 C -0.112 4.112 18 H 0.261 0.739 19 H 0.010 0.990 20 H 0.076 0.924 21 H 0.348 0.652 22 H 0.048 0.952 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.452 -6.314 -0.297 6.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.078 0.922 9 C 0.043 3.957 10 H 0.050 0.950 11 C -0.005 4.005 12 O -0.387 6.387 13 C -0.096 4.096 14 C -0.139 4.139 15 C -0.168 4.168 16 C -0.162 4.162 17 C -0.150 4.150 18 H 0.071 0.929 19 H 0.028 0.972 20 H 0.094 0.906 21 H 0.192 0.808 22 H 0.067 0.933 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.637 -6.238 0.285 6.778 hybrid contribution 0.210 1.129 -0.649 1.319 sum 2.846 -5.108 -0.365 5.859 Atomic orbital electron populations 1.69876 1.05897 1.26613 1.50570 1.25047 0.94880 0.99220 0.95064 0.86662 0.79616 0.83112 0.78679 1.20288 1.21322 1.20174 1.21155 0.93064 0.90198 1.50421 0.92236 1.18764 0.91758 0.91603 0.93591 0.94963 1.22718 0.93317 0.86015 0.98450 1.86573 1.58141 1.46961 1.47048 1.21750 0.96524 0.95257 0.96098 1.22354 0.98612 0.94832 0.98132 1.22577 0.99070 0.97470 0.97661 1.22370 0.99557 0.96451 0.97806 1.22141 0.98428 0.97024 0.97416 0.92876 0.97168 0.90594 0.80833 0.93335 0.90957 0.93092 0.92774 0.92972 0.93207 0.92284 0.93666 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 11.29 55.43 0.63 -24.83 16 2 C 0.06 1.63 5.29 -17.82 -0.09 1.53 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.90 7.57 -34.44 -0.26 -14.16 16 8 H 0.06 1.60 7.45 -52.49 -0.39 1.21 16 9 C 0.06 1.57 1.46 -91.77 -0.13 1.43 16 10 H 0.03 0.92 8.12 -51.93 -0.42 0.50 16 11 C 0.07 1.76 6.24 37.16 0.23 1.99 16 12 O -0.58 -12.54 10.61 -35.23 -0.37 -12.91 16 13 C -0.08 -1.70 2.47 -89.51 -0.22 -1.92 16 14 C -0.10 -2.00 4.69 -25.07 -0.12 -2.12 16 15 C -0.13 -2.17 6.91 -24.74 -0.17 -2.34 16 16 C -0.12 -2.13 6.83 -25.08 -0.17 -2.31 16 17 C -0.11 -2.26 5.82 -25.62 -0.15 -2.41 16 18 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 19 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 20 H 0.08 2.05 5.95 -51.92 -0.31 1.74 16 21 H 0.35 5.82 9.12 45.56 0.42 6.23 16 22 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 23 H 0.07 1.55 6.82 -51.93 -0.35 1.20 16 24 H 0.05 0.97 7.93 -51.93 -0.41 0.56 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.64 7.10 -51.93 -0.37 1.28 16 LS Contribution 237.82 15.07 3.58 3.58 Total: -1.00 -28.60 237.82 -6.21 -34.81 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -3.93 Total: 3.53 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -1.09 Total: -20.31 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.63 Total: -24.83 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.37 Total: -12.91 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.60 -6.21 -34.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136248055.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.961 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds