Wall clock time and date at job start Mon Mar 30 2020 02:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99867 * 2 1 4 4 H 1.48495 * 109.47048 * 240.00140 * 3 2 1 5 5 H 1.48501 * 109.46850 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46615 * 120.00168 * 3 2 1 7 7 C 1.37873 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00259 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.46923 * 300.00145 * 9 7 2 11 11 C 1.52999 * 109.47130 * 59.99876 * 9 7 2 12 12 O 1.42903 * 109.47256 * 185.00526 * 11 9 7 13 13 C 1.52999 * 109.47366 * 180.02562 * 9 7 2 14 14 C 1.54268 * 110.03276 * 177.16788 * 13 9 7 15 15 C 1.54895 * 104.19144 * 217.10271 * 14 13 9 16 16 C 1.54888 * 102.74979 * 37.93953 * 15 14 13 17 17 C 1.53866 * 110.03373 * 59.99743 * 13 9 7 18 18 H 0.96999 * 120.00393 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.47286 * 65.00087 * 11 9 7 20 20 H 1.09008 * 109.47201 * 304.99867 * 11 9 7 21 21 H 0.96700 * 114.00311 * 180.02562 * 12 11 9 22 22 H 1.09003 * 110.01198 * 298.60263 * 13 9 7 23 23 H 1.08997 * 110.48543 * 335.77820 * 14 13 9 24 24 H 1.08996 * 110.48951 * 98.42473 * 14 13 9 25 25 H 1.08998 * 110.75636 * 279.62385 * 15 14 13 26 26 H 1.09000 * 110.91248 * 156.32977 * 15 14 13 27 27 H 1.08999 * 110.48760 * 203.37232 * 16 15 14 28 28 H 1.09008 * 110.59502 * 80.78888 * 16 15 14 29 29 H 1.09000 * 110.03225 * 238.57122 * 17 13 9 30 30 H 1.09006 * 110.03611 * 359.97438 * 17 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5570 0.8897 11 6 0.3709 -2.5799 -1.2494 12 8 -0.4300 -3.7620 -1.1921 13 6 2.2453 -3.6620 -0.0005 14 6 1.4884 -5.0044 0.0711 15 6 2.3788 -5.8947 0.9732 16 6 2.8914 -4.8957 2.0401 17 6 3.1372 -3.5930 1.2513 18 1 -0.4851 0.8400 0.0004 19 1 1.0022 -2.6114 -2.1374 20 1 -0.2766 -1.7042 -1.2949 21 1 -1.0141 -3.8787 -1.9539 22 1 2.8604 -3.6269 -0.8998 23 1 0.5064 -4.8649 0.5229 24 1 1.3935 -5.4423 -0.9225 25 1 3.2094 -6.3124 0.4044 26 1 1.7925 -6.6880 1.4369 27 1 3.8203 -5.2544 2.4835 28 1 2.1375 -4.7381 2.8115 29 1 4.1853 -3.5252 0.9597 30 1 2.8621 -2.7306 1.8588 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136248055.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:11 Heat of formation + Delta-G solvation = -98.263405 kcal Electronic energy + Delta-G solvation = -11788.020572 eV Core-core repulsion = 9774.229113 eV Total energy + Delta-G solvation = -2013.791460 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.55476 -37.08654 -35.14368 -32.18059 -29.39428 -27.83289 -26.46303 -22.55259 -21.35221 -20.17341 -18.52222 -17.65475 -16.62402 -16.49907 -15.80188 -14.77922 -14.57810 -14.24048 -13.87685 -13.22446 -13.18168 -12.77780 -12.49149 -12.22114 -11.86664 -11.65738 -11.58112 -11.31783 -11.20208 -10.90747 -10.81717 -10.62660 -10.19419 -8.11166 -6.26168 1.41540 1.42615 1.50497 2.41735 3.12356 3.94659 3.97430 4.05840 4.08494 4.55860 4.76406 4.84115 4.89008 4.95714 4.98563 5.05588 5.16060 5.25873 5.31618 5.36976 5.55432 5.61762 5.64603 5.74986 5.99449 6.01575 6.34692 6.85867 7.19477 7.42309 8.92610 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.044684 B = 0.014170 C = 0.011443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.476264 B = 1975.490654 C = 2446.382858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.060 3.940 10 H -0.010 1.010 11 C 0.085 3.915 12 O -0.584 6.584 13 C -0.079 4.079 14 C -0.097 4.097 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.113 4.113 18 H 0.262 0.738 19 H 0.015 0.985 20 H 0.048 0.952 21 H 0.372 0.628 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.676 -7.191 -0.390 8.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.564 4.564 8 H 0.077 0.923 9 C 0.041 3.959 10 H 0.008 0.992 11 C 0.007 3.993 12 O -0.390 6.390 13 C -0.098 4.098 14 C -0.135 4.135 15 C -0.158 4.158 16 C -0.157 4.157 17 C -0.151 4.151 18 H 0.071 0.929 19 H 0.033 0.967 20 H 0.066 0.934 21 H 0.219 0.781 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.856 -7.131 0.180 8.109 hybrid contribution -0.228 1.375 -0.637 1.533 sum 3.628 -5.756 -0.458 6.820 Atomic orbital electron populations 1.70020 1.07299 1.27339 1.51287 1.25832 0.95678 1.02635 0.94700 0.85646 0.78403 0.78893 0.78975 1.19388 1.21026 1.19621 1.21451 0.93217 0.91333 1.50350 0.92264 1.18701 0.92178 0.92859 0.92159 0.99182 1.22340 0.92968 0.85921 0.98028 1.86524 1.58431 1.45330 1.48701 1.21713 0.96115 0.95061 0.96880 1.22235 0.97820 0.94331 0.99072 1.22541 0.99197 0.97164 0.96866 1.22350 1.00922 0.94885 0.97562 1.22101 0.98641 0.97739 0.96600 0.92928 0.96721 0.93404 0.78144 0.93666 0.93278 0.92567 0.90820 0.90892 0.90280 0.92838 0.92361 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.73 11.29 21.45 0.24 -53.48 16 2 C 0.01 0.55 5.29 84.65 0.45 1.00 16 3 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.53 -29.09 7.57 25.60 0.19 -28.90 16 8 H 0.06 3.20 7.45 -2.91 -0.02 3.18 16 9 C 0.06 3.11 1.46 -11.54 -0.02 3.09 16 10 H -0.01 -0.60 8.12 -2.39 -0.02 -0.62 16 11 C 0.08 4.21 6.24 71.98 0.45 4.66 16 12 O -0.58 -24.90 10.61 -148.98 -1.58 -26.48 16 13 C -0.08 -3.44 2.47 -10.07 -0.02 -3.46 16 14 C -0.10 -3.68 4.69 31.67 0.15 -3.54 16 15 C -0.12 -3.63 6.91 31.89 0.22 -3.41 16 16 C -0.12 -3.82 6.83 31.67 0.22 -3.60 16 17 C -0.11 -4.45 5.82 31.31 0.18 -4.26 16 18 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 19 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 20 H 0.05 2.65 5.95 -2.38 -0.01 2.63 16 21 H 0.37 12.00 9.12 -74.06 -0.68 11.32 16 22 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.05 2.08 6.82 -2.39 -0.02 2.07 16 24 H 0.06 2.04 7.93 -2.39 -0.02 2.02 16 25 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.04 2.03 7.10 -2.38 -0.02 2.01 16 Total: -1.00 -61.49 237.82 2.94 -58.55 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.43 Total: 14.25 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 1.82 Total: -38.41 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.24 Total: -53.48 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -1.58 Total: -26.48 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -61.49 2.94 -58.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136248055.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.713 kcal (2) G-P(sol) polarization free energy of solvation -61.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds