Wall clock time and date at job start Mon Mar 30 2020 02:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99765 * 2 1 4 4 H 1.48499 * 109.47120 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46865 * 120.00407 * 3 2 1 6 6 H 1.48497 * 109.47318 * 239.99717 * 3 2 1 7 7 C 1.37879 * 120.00434 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99549 * 17.74772 * 7 2 1 9 9 C 1.50695 * 120.00175 * 197.74867 * 7 2 1 10 10 H 1.08996 * 109.47129 * 305.67073 * 9 7 2 11 11 C 1.53003 * 109.47187 * 65.67279 * 9 7 2 12 12 C 1.52992 * 109.47084 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47544 * 300.00161 * 12 11 9 14 14 C 1.53003 * 109.47062 * 59.99826 * 13 12 11 15 15 H 1.08996 * 109.47254 * 60.00360 * 14 13 12 16 16 C 1.52995 * 109.46873 * 180.02562 * 14 13 12 17 17 O 1.42904 * 109.47224 * 294.99803 * 16 14 13 18 18 C 1.52995 * 109.46960 * 185.67329 * 9 7 2 19 19 H 0.97002 * 119.99733 * 174.60886 * 1 2 3 20 20 H 1.09000 * 109.46619 * 300.00121 * 11 9 7 21 21 H 1.09005 * 109.46697 * 59.99715 * 11 9 7 22 22 H 1.09005 * 109.47402 * 60.00372 * 12 11 9 23 23 H 1.09006 * 109.46908 * 179.97438 * 12 11 9 24 24 H 1.08994 * 109.47629 * 180.02562 * 13 12 11 25 25 H 1.09000 * 109.46520 * 300.00331 * 13 12 11 26 26 H 1.08998 * 109.47710 * 54.99962 * 16 14 13 27 27 H 1.08997 * 109.47052 * 175.00294 * 16 14 13 28 28 H 0.96700 * 114.00148 * 180.02562 * 17 16 14 29 29 H 1.09001 * 109.47413 * 299.99990 * 18 9 7 30 30 H 1.08998 * 109.47675 * 59.99752 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 1.5031 -2.1069 -0.2861 9 6 3.4577 -1.2252 0.3973 10 1 4.0161 -0.5130 -0.2102 11 6 3.5903 -0.8495 1.8745 12 6 5.0656 -0.8818 2.2786 13 6 5.6242 -2.2890 2.0581 14 6 5.4916 -2.6647 0.5808 15 1 6.0503 -1.9528 -0.0267 16 6 6.0496 -4.0721 0.3605 17 8 7.4536 -4.0750 0.6268 18 6 4.0168 -2.6322 0.1767 19 1 -0.4850 -0.8364 -0.0789 20 1 3.1919 0.1528 2.0316 21 1 3.0318 -1.5618 2.4820 22 1 5.6243 -0.1698 1.6711 23 1 5.1600 -0.6137 3.3309 24 1 6.6750 -2.3122 2.3463 25 1 5.0654 -3.0009 2.6655 26 1 5.5509 -4.7701 1.0329 27 1 5.8751 -4.3746 -0.6720 28 1 7.8750 -4.9370 0.5066 29 1 3.4584 -3.3444 0.7842 30 1 3.9224 -2.8999 -0.8757 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000143072510.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:13 Heat of formation + Delta-G solvation = -107.884910 kcal Electronic energy + Delta-G solvation = -11657.104338 eV Core-core repulsion = 9642.895658 eV Total energy + Delta-G solvation = -2014.208679 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.84988 -37.36096 -34.93047 -32.38009 -31.81737 -26.39639 -26.31174 -22.72960 -21.78362 -20.53063 -19.51146 -18.12211 -16.41123 -16.05372 -15.35304 -15.22589 -15.03081 -14.65435 -14.15188 -13.61957 -13.14446 -12.93655 -12.44802 -12.34637 -12.09152 -11.83049 -11.70879 -11.38615 -11.19898 -10.92898 -10.84242 -10.53138 -10.31056 -8.71984 -6.33844 1.45724 1.52867 1.72652 2.49590 3.07763 3.38787 3.84738 4.02820 4.12767 4.39903 4.47672 4.54099 4.71477 4.72723 4.80781 4.83327 4.95421 4.95769 5.11839 5.34432 5.37287 5.39942 5.52621 5.61315 5.82112 6.04560 6.17264 6.61168 6.95859 7.43324 8.65595 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.060358 B = 0.011916 C = 0.011035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.786022 B = 2349.197655 C = 2536.820780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.024 4.024 3 Si 1.083 2.917 4 H -0.291 1.291 5 H -0.240 1.240 6 H -0.266 1.266 7 C -0.601 4.601 8 H 0.014 0.986 9 C 0.017 3.983 10 H 0.020 0.980 11 C -0.119 4.119 12 C -0.118 4.118 13 C -0.098 4.098 14 C -0.088 4.088 15 H 0.066 0.934 16 C 0.087 3.913 17 O -0.586 6.586 18 C -0.085 4.085 19 H 0.250 0.750 20 H 0.045 0.955 21 H 0.038 0.962 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.395 0.605 29 H 0.043 0.957 30 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.210 -5.184 2.880 15.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.221 4.221 3 Si 0.905 3.095 4 H -0.218 1.218 5 H -0.165 1.165 6 H -0.191 1.191 7 C -0.639 4.639 8 H 0.033 0.967 9 C -0.002 4.002 10 H 0.038 0.962 11 C -0.157 4.157 12 C -0.156 4.156 13 C -0.135 4.135 14 C -0.106 4.106 15 H 0.084 0.916 16 C 0.009 3.991 17 O -0.395 6.395 18 C -0.123 4.123 19 H 0.059 0.941 20 H 0.063 0.937 21 H 0.057 0.943 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.244 0.756 29 H 0.062 0.938 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.894 -2.952 3.076 14.533 hybrid contribution -0.688 -2.535 -0.486 2.671 sum 13.206 -5.488 2.590 14.533 Atomic orbital electron populations 1.70996 1.08301 1.29840 1.48905 1.27231 0.96081 1.06427 0.92386 0.83588 0.74896 0.71542 0.79476 1.21781 1.16476 1.19110 1.22319 0.97764 0.94408 1.49412 0.96729 1.18962 0.93698 0.94318 0.93190 0.96150 1.21921 0.95807 1.00153 0.97832 1.21603 0.95337 0.97532 1.01106 1.21411 1.00786 0.96256 0.95058 1.21168 0.95078 0.96617 0.97760 0.91589 1.22138 0.81252 0.96388 0.99325 1.86428 1.21756 1.38518 1.92754 1.21300 0.93945 0.97630 0.99431 0.94117 0.93654 0.94332 0.92245 0.91176 0.90840 0.92561 0.92997 0.93169 0.75554 0.93805 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.73 13.69 21.45 0.29 -60.44 16 2 C -0.02 -1.44 5.33 84.66 0.45 -0.99 16 3 Si 1.08 51.24 26.37 68.60 1.81 53.05 16 4 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 5 H -0.24 -10.10 5.62 99.48 0.56 -9.54 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.60 -35.04 8.82 25.60 0.23 -34.81 16 8 H 0.01 0.92 7.99 -2.91 -0.02 0.90 16 9 C 0.02 0.82 1.69 -11.54 -0.02 0.80 16 10 H 0.02 0.96 6.79 -2.39 -0.02 0.95 16 11 C -0.12 -5.13 4.89 30.59 0.15 -4.98 16 12 C -0.12 -3.99 5.92 30.59 0.18 -3.80 16 13 C -0.10 -3.01 5.10 30.59 0.16 -2.86 16 14 C -0.09 -2.85 2.43 -10.81 -0.03 -2.87 16 15 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 16 C 0.09 2.24 6.43 71.98 0.46 2.70 16 17 O -0.59 -13.77 13.20 -148.98 -1.97 -15.74 16 18 C -0.09 -3.43 4.42 30.58 0.14 -3.29 16 19 H 0.25 16.30 8.73 -92.71 -0.81 15.49 16 20 H 0.04 2.04 4.83 -2.39 -0.01 2.03 16 21 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 22 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 23 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 24 H 0.07 2.07 7.82 -2.39 -0.02 2.05 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.39 5.13 9.12 -74.06 -0.68 4.45 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -67.66 236.67 2.10 -65.57 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 0.24 Total: 7.67 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 1.72 Total: -50.10 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: 0.29 Total: -60.44 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -1.97 Total: -15.74 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 1.81 Total: 53.05 kcal Total: -67.66 2.10 -65.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143072510.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.319 kcal (2) G-P(sol) polarization free energy of solvation -67.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds