Wall clock time and date at job start Mon Mar 30 2020 02:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 C 1.52996 * 109.46842 * 299.71996 * 9 7 2 12 12 C 1.53003 * 109.46915 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47301 * 60.00084 * 12 11 9 14 14 C 1.53005 * 109.46653 * 299.99854 * 13 12 11 15 15 H 1.08994 * 109.47407 * 299.99706 * 14 13 12 16 16 C 1.53003 * 109.46792 * 179.97438 * 14 13 12 17 17 O 1.42901 * 109.46900 * 65.00038 * 16 14 13 18 18 C 1.52994 * 109.46916 * 60.00417 * 14 13 12 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.47532 * 300.00309 * 11 9 7 21 21 H 1.09001 * 109.47094 * 60.00208 * 11 9 7 22 22 H 1.09000 * 109.46939 * 299.99421 * 12 11 9 23 23 H 1.09004 * 109.47038 * 180.02562 * 12 11 9 24 24 H 1.08994 * 109.47089 * 180.02562 * 13 12 11 25 25 H 1.08994 * 109.46974 * 59.99825 * 13 12 11 26 26 H 1.08994 * 109.47355 * 185.00029 * 16 14 13 27 27 H 1.08997 * 109.47532 * 305.00559 * 16 14 13 28 28 H 0.96700 * 114.00343 * 179.97438 * 17 16 14 29 29 H 1.09004 * 109.46806 * 179.97438 * 18 14 13 30 30 H 1.09000 * 109.47828 * 59.99866 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 6 0.3713 -2.5857 1.2434 12 6 -0.3933 -3.9110 1.2378 13 6 0.6012 -5.0736 1.2330 14 6 1.4809 -4.9870 -0.0159 15 1 0.8543 -5.0412 -0.9061 16 6 2.4759 -6.1493 -0.0204 17 8 1.7660 -7.3835 -0.1427 18 6 2.2455 -3.6618 -0.0101 19 1 -0.4850 0.8401 -0.0004 20 1 0.9978 -2.5319 2.1338 21 1 -0.3370 -1.7572 1.2471 22 1 -1.0200 -3.9651 0.3476 23 1 -1.0204 -3.9725 2.1273 24 1 0.0565 -6.0177 1.2285 25 1 1.2277 -5.0194 2.1232 26 1 3.1600 -6.0387 -0.8616 27 1 3.0420 -6.1466 0.9111 28 1 2.3351 -8.1652 -0.1528 29 1 2.8725 -3.6003 -0.8997 30 1 2.8721 -3.6076 0.8801 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000143073115.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:20 Heat of formation + Delta-G solvation = -85.564364 kcal Electronic energy + Delta-G solvation = -11600.131786 eV Core-core repulsion = 9586.890998 eV Total energy + Delta-G solvation = -2013.240788 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.14075 -35.97161 -32.84463 -30.48287 -29.63240 -24.80017 -24.69043 -21.10995 -20.15044 -18.74238 -16.94651 -16.17540 -14.69276 -14.65263 -13.99060 -13.45264 -12.96121 -12.66002 -12.30229 -11.83841 -11.45049 -10.92718 -10.81821 -10.60622 -10.40093 -10.11031 -9.93767 -9.74864 -9.65387 -9.28838 -8.84723 -8.55356 -8.23550 -5.92871 -3.99247 3.32797 3.39502 3.42592 4.45061 4.59010 5.30812 5.37023 5.50826 5.66181 5.85801 5.96016 6.25680 6.34628 6.49244 6.54614 6.59360 6.75537 6.83372 6.90878 7.08026 7.21443 7.35405 7.61416 7.80694 7.84647 8.08867 8.23090 8.52740 9.04996 9.64909 11.12558 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.069634 B = 0.010568 C = 0.009560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.008488 B = 2648.836912 C = 2928.165396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.050 3.950 10 H 0.025 0.975 11 C -0.110 4.110 12 C -0.120 4.120 13 C -0.102 4.102 14 C -0.087 4.087 15 H 0.069 0.931 16 C 0.079 3.921 17 O -0.575 6.575 18 C -0.100 4.100 19 H 0.259 0.741 20 H 0.031 0.969 21 H 0.089 0.911 22 H 0.050 0.950 23 H 0.041 0.959 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.369 0.631 29 H 0.046 0.954 30 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 -9.023 1.202 9.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.032 3.968 10 H 0.043 0.957 11 C -0.148 4.148 12 C -0.158 4.158 13 C -0.140 4.140 14 C -0.105 4.105 15 H 0.087 0.913 16 C 0.002 3.998 17 O -0.379 6.379 18 C -0.137 4.137 19 H 0.069 0.931 20 H 0.050 0.950 21 H 0.108 0.892 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.215 0.785 29 H 0.064 0.936 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.388 -8.475 1.198 8.886 hybrid contribution 1.011 0.573 0.014 1.162 sum 3.399 -7.902 1.212 8.687 Atomic orbital electron populations 1.69893 1.05840 1.26224 1.50948 1.24975 0.94840 0.98971 0.95288 0.86645 0.79884 0.83740 0.78010 1.20793 1.21291 1.20016 1.21234 0.92832 0.90789 1.50230 0.92845 1.18620 0.92574 0.91138 0.94477 0.95723 1.21613 0.99486 0.95178 0.98523 1.21638 0.97539 0.96728 0.99862 1.21454 0.97659 0.98034 0.96825 1.21240 0.96647 0.93407 0.99229 0.91260 1.22399 0.94460 0.84118 0.98866 1.86524 1.38182 1.16054 1.97157 1.21623 0.98655 0.93430 1.00024 0.93122 0.94970 0.89249 0.93078 0.94062 0.93049 0.93143 0.94125 0.94115 0.78539 0.93563 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 11.33 55.43 0.63 -25.16 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.27 8.56 -34.44 -0.29 -14.56 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.27 2.10 -91.77 -0.19 1.08 16 10 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 11 C -0.11 -2.67 4.98 -26.73 -0.13 -2.80 16 12 C -0.12 -2.46 5.92 -26.73 -0.16 -2.62 16 13 C -0.10 -1.90 5.10 -26.73 -0.14 -2.03 16 14 C -0.09 -1.62 2.43 -90.62 -0.22 -1.84 16 15 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 16 C 0.08 1.21 6.43 37.16 0.24 1.45 16 17 O -0.57 -8.33 13.19 -35.23 -0.46 -8.80 16 18 C -0.10 -2.11 4.42 -26.74 -0.12 -2.22 16 19 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 20 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.09 2.42 6.08 -51.93 -0.32 2.10 16 22 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.91 7.82 -51.93 -0.41 0.50 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.37 3.37 9.12 45.56 0.42 3.79 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 241.12 15.07 3.63 3.63 Total: -1.00 -29.68 241.12 -6.41 -36.08 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -4.08 Total: -0.28 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -1.11 Total: -21.96 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.63 Total: -25.16 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.46 Total: -8.80 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -29.68 -6.41 -36.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143073115.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.480 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds