Wall clock time and date at job start Mon Mar 30 2020 02:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 C 1.52996 * 109.46842 * 299.71996 * 9 7 2 12 12 C 1.53003 * 109.46915 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47301 * 60.00084 * 12 11 9 14 14 C 1.53005 * 109.46653 * 299.99854 * 13 12 11 15 15 H 1.08994 * 109.47407 * 299.99706 * 14 13 12 16 16 C 1.53003 * 109.46792 * 179.97438 * 14 13 12 17 17 O 1.42901 * 109.46900 * 65.00038 * 16 14 13 18 18 C 1.52994 * 109.46916 * 60.00417 * 14 13 12 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.47532 * 300.00309 * 11 9 7 21 21 H 1.09001 * 109.47094 * 60.00208 * 11 9 7 22 22 H 1.09000 * 109.46939 * 299.99421 * 12 11 9 23 23 H 1.09004 * 109.47038 * 180.02562 * 12 11 9 24 24 H 1.08994 * 109.47089 * 180.02562 * 13 12 11 25 25 H 1.08994 * 109.46974 * 59.99825 * 13 12 11 26 26 H 1.08994 * 109.47355 * 185.00029 * 16 14 13 27 27 H 1.08997 * 109.47532 * 305.00559 * 16 14 13 28 28 H 0.96700 * 114.00343 * 179.97438 * 17 16 14 29 29 H 1.09004 * 109.46806 * 179.97438 * 18 14 13 30 30 H 1.09000 * 109.47828 * 59.99866 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 6 0.3713 -2.5857 1.2434 12 6 -0.3933 -3.9110 1.2378 13 6 0.6012 -5.0736 1.2330 14 6 1.4809 -4.9870 -0.0159 15 1 0.8543 -5.0412 -0.9061 16 6 2.4759 -6.1493 -0.0204 17 8 1.7660 -7.3835 -0.1427 18 6 2.2455 -3.6618 -0.0101 19 1 -0.4850 0.8401 -0.0004 20 1 0.9978 -2.5319 2.1338 21 1 -0.3370 -1.7572 1.2471 22 1 -1.0200 -3.9651 0.3476 23 1 -1.0204 -3.9725 2.1273 24 1 0.0565 -6.0177 1.2285 25 1 1.2277 -5.0194 2.1232 26 1 3.1600 -6.0387 -0.8616 27 1 3.0420 -6.1466 0.9111 28 1 2.3351 -8.1652 -0.1528 29 1 2.8725 -3.6003 -0.8997 30 1 2.8721 -3.6076 0.8801 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000143073115.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:20 Heat of formation + Delta-G solvation = -105.375425 kcal Electronic energy + Delta-G solvation = -11600.990858 eV Core-core repulsion = 9586.890998 eV Total energy + Delta-G solvation = -2014.099860 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.70887 -37.29083 -34.82023 -32.09582 -31.51709 -26.77034 -26.18684 -22.84894 -21.81767 -20.45022 -18.32064 -18.04553 -16.64210 -16.00220 -15.63429 -14.93340 -14.68379 -14.42266 -14.04918 -13.39235 -13.26545 -12.85112 -12.52428 -12.33313 -12.13084 -11.83490 -11.66590 -11.55268 -11.20656 -10.82773 -10.68358 -10.45631 -10.31702 -8.06259 -6.20986 1.41250 1.41683 1.52127 2.43914 3.19638 3.46137 3.91123 4.12415 4.22306 4.48175 4.56447 4.71332 4.79314 4.85251 4.92288 4.93563 5.08520 5.16870 5.21434 5.47430 5.48034 5.50182 5.64772 5.74115 6.04579 6.21305 6.41909 6.92247 7.00849 7.46987 8.97708 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.069634 B = 0.010568 C = 0.009560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.008488 B = 2648.836912 C = 2928.165396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.009 3.991 3 Si 0.954 3.046 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.534 4.534 8 H 0.053 0.947 9 C 0.044 3.956 10 H -0.012 1.012 11 C -0.104 4.104 12 C -0.115 4.115 13 C -0.095 4.095 14 C -0.087 4.087 15 H 0.052 0.948 16 C 0.088 3.912 17 O -0.589 6.589 18 C -0.090 4.090 19 H 0.259 0.741 20 H 0.029 0.971 21 H 0.055 0.945 22 H 0.039 0.961 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.395 0.605 29 H 0.047 0.953 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.223 -10.029 1.709 11.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.026 3.974 10 H 0.006 0.994 11 C -0.142 4.142 12 C -0.153 4.153 13 C -0.132 4.132 14 C -0.105 4.105 15 H 0.070 0.930 16 C 0.011 3.989 17 O -0.398 6.398 18 C -0.128 4.128 19 H 0.068 0.932 20 H 0.048 0.952 21 H 0.073 0.927 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.244 0.756 29 H 0.066 0.934 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.575 -9.510 1.703 10.302 hybrid contribution 0.617 0.868 -0.166 1.078 sum 4.192 -8.642 1.537 9.727 Atomic orbital electron populations 1.70045 1.07249 1.26984 1.51529 1.25789 0.95689 1.02497 0.94962 0.85615 0.78795 0.79430 0.78170 1.20246 1.20955 1.19125 1.21637 0.93084 0.92266 1.50270 0.92848 1.18615 0.93130 0.92346 0.93332 0.99377 1.21433 0.98796 0.96182 0.97759 1.21561 0.97846 0.95649 1.00217 1.21395 0.97255 0.97406 0.97164 1.21148 0.97063 0.93746 0.98592 0.92981 1.22160 0.93203 0.83283 1.00299 1.86446 1.39358 1.16749 1.97200 1.21436 0.97744 0.93286 1.00310 0.93157 0.95240 0.92678 0.94172 0.92275 0.91550 0.92082 0.92918 0.92485 0.75587 0.93427 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.50 11.33 21.45 0.24 -54.26 16 2 C 0.01 0.50 5.31 84.66 0.45 0.95 16 3 Si 0.95 44.30 29.54 68.60 2.03 46.32 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.53 -30.12 8.56 25.60 0.22 -29.90 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 9 C 0.04 2.28 2.10 -11.54 -0.02 2.26 16 10 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 11 C -0.10 -5.10 4.98 30.59 0.15 -4.94 16 12 C -0.12 -4.66 5.92 30.59 0.18 -4.48 16 13 C -0.09 -3.32 5.10 30.59 0.16 -3.16 16 14 C -0.09 -3.10 2.43 -10.79 -0.03 -3.13 16 15 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 16 C 0.09 2.41 6.43 71.98 0.46 2.87 16 17 O -0.59 -15.04 13.19 -148.98 -1.97 -17.01 16 18 C -0.09 -3.74 4.42 30.59 0.14 -3.61 16 19 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 20 H 0.03 1.41 8.14 -2.39 -0.02 1.40 16 21 H 0.05 3.08 6.08 -2.39 -0.01 3.06 16 22 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 24 H 0.07 2.16 7.82 -2.39 -0.02 2.14 16 25 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.39 5.68 9.12 -74.06 -0.68 5.01 16 29 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -63.61 241.12 2.43 -61.18 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 0.42 Total: 6.90 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 1.71 Total: -43.14 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.24 Total: -54.26 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -1.97 Total: -17.01 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -63.61 2.43 -61.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143073115.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.196 kcal (2) G-P(sol) polarization free energy of solvation -63.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds