Wall clock time and date at job start Mon Mar 30 2020 01:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.34810 * 2 1 4 4 C 1.55201 * 110.37207 * 238.04537 * 2 1 3 5 5 C 1.55304 * 100.82766 * 204.79615 * 4 2 1 6 6 H 1.09001 * 110.85042 * 275.59710 * 5 4 2 7 7 C 1.50693 * 110.84953 * 152.17771 * 5 4 2 8 8 O 1.21437 * 120.00034 * 337.77375 * 7 5 4 9 9 C 1.41030 * 119.99896 * 157.77225 * 7 5 4 10 10 H 1.07997 * 120.00092 * 8.58591 * 9 7 5 11 11 C 1.40463 * 119.99701 * 188.58314 * 9 7 5 12 12 N 1.30525 * 119.99794 * 193.71957 * 11 9 7 13 13 Si 1.86800 * 120.00362 * 13.71636 * 11 9 7 14 14 H 1.48498 * 109.47402 * 270.00233 * 13 11 9 15 15 H 1.48500 * 109.46880 * 30.00051 * 13 11 9 16 16 H 1.48497 * 109.47194 * 149.99957 * 13 11 9 17 17 C 1.54381 * 102.43295 * 33.88527 * 5 4 2 18 18 O 1.43230 * 107.59216 * 338.74373 * 17 5 4 19 19 H 1.08993 * 109.47439 * 299.30962 * 1 2 3 20 20 H 1.09000 * 109.47088 * 59.31180 * 1 2 3 21 21 H 1.09001 * 109.46750 * 179.31089 * 1 2 3 22 22 H 1.09004 * 111.30892 * 86.86273 * 4 2 1 23 23 H 1.08999 * 111.05084 * 322.62254 * 4 2 1 24 24 H 0.97003 * 119.99792 * 354.74898 * 12 11 9 25 25 H 1.08999 * 109.82863 * 98.26091 * 17 5 4 26 26 H 1.09006 * 109.82922 * 219.14077 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9090 1.0220 0.0000 4 6 2.0703 -0.7700 -1.2345 5 6 3.4700 -1.2024 -0.7189 6 1 4.2002 -0.4064 -0.8649 7 6 3.9217 -2.4716 -1.3942 8 8 3.1038 -3.2195 -1.8906 9 6 5.2943 -2.7908 -1.4496 10 1 6.0084 -2.2029 -0.8921 11 6 5.7325 -3.8734 -2.2299 12 7 6.9429 -4.3384 -2.0798 13 14 4.5833 -4.6479 -3.4824 14 1 3.8155 -5.7439 -2.8386 15 1 3.6427 -3.6188 -3.9939 16 1 5.3779 -5.1966 -4.6106 17 6 3.2113 -1.4418 0.7841 18 8 2.0287 -0.7166 1.1406 19 1 -0.3634 0.5030 0.8960 20 1 -0.3633 0.5245 -0.8837 21 1 -0.3633 -1.0276 -0.0124 22 1 2.1561 -0.1164 -2.1026 23 1 1.4488 -1.6372 -1.4578 24 1 7.5645 -3.8897 -1.4854 25 1 3.0625 -2.5057 0.9688 26 1 4.0583 -1.0802 1.3673 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162106411.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:25 Heat of formation + Delta-G solvation = -137.322663 kcal Electronic energy + Delta-G solvation = -11346.361800 eV Core-core repulsion = 9195.043509 eV Total energy + Delta-G solvation = -2151.318291 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.88162 -38.86031 -35.29973 -33.25012 -32.67163 -29.07161 -26.89270 -24.12188 -22.11391 -20.98192 -19.42157 -17.92347 -17.00114 -16.43844 -15.99998 -15.57659 -15.09288 -14.76031 -14.36734 -14.02360 -13.32904 -13.23195 -12.85139 -12.69255 -12.33968 -11.95081 -11.84120 -11.70955 -11.44984 -11.22506 -10.52466 -9.95784 -9.17151 -7.42886 1.24217 1.49680 1.85086 1.94557 2.33801 2.80579 3.00624 3.68994 3.76881 4.00515 4.16835 4.25362 4.44458 4.57100 4.67034 4.71890 4.86167 4.98780 5.05003 5.22543 5.32871 5.35697 5.64799 6.01474 6.19503 6.43741 7.73730 7.87527 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.069753 B = 0.012307 C = 0.011031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.319537 B = 2274.558510 C = 2537.722563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.072 3.928 3 H 0.088 0.912 4 C -0.135 4.135 5 C -0.156 4.156 6 H 0.097 0.903 7 C 0.358 3.642 8 O -0.605 6.605 9 C -0.602 4.602 10 H 0.068 0.932 11 C 0.028 3.972 12 N -0.814 5.814 13 Si 1.153 2.847 14 H -0.290 1.290 15 H -0.284 1.284 16 H -0.300 1.300 17 C 0.078 3.922 18 O -0.398 6.398 19 H 0.072 0.928 20 H 0.091 0.909 21 H 0.049 0.951 22 H 0.093 0.907 23 H 0.068 0.932 24 H 0.285 0.715 25 H 0.048 0.952 26 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.224 8.105 1.876 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.015 3.985 3 H 0.106 0.894 4 C -0.172 4.172 5 C -0.175 4.175 6 H 0.116 0.884 7 C 0.261 3.739 8 O -0.505 6.505 9 C -0.632 4.632 10 H 0.087 0.913 11 C -0.191 4.191 12 N -0.440 5.440 13 Si 0.981 3.019 14 H -0.218 1.218 15 H -0.211 1.211 16 H -0.230 1.230 17 C 0.002 3.998 18 O -0.318 6.318 19 H 0.091 0.909 20 H 0.110 0.890 21 H 0.068 0.932 22 H 0.112 0.888 23 H 0.087 0.913 24 H 0.096 0.904 25 H 0.066 0.934 26 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.733 6.628 0.886 10.224 hybrid contribution 0.959 1.162 1.264 1.966 sum -6.775 7.790 2.150 10.545 Atomic orbital electron populations 1.21875 0.92086 1.02557 1.03640 1.23247 0.96149 0.95517 0.83559 0.89440 1.23260 0.94524 1.00538 0.98894 1.22998 0.99049 0.99305 0.96185 0.88436 1.19771 0.89109 0.85839 0.79147 1.89954 1.56595 1.52970 1.50973 1.22128 0.96078 1.16011 1.29002 0.91323 1.28284 0.98802 0.93555 0.98508 1.70538 1.06581 1.35084 1.31824 0.82129 0.71210 0.75608 0.72932 1.21764 1.21135 1.22989 1.22785 0.87836 0.95743 0.93484 1.88309 1.42909 1.65200 1.35411 0.90933 0.89045 0.93206 0.88819 0.91315 0.90369 0.93410 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.63 71.98 0.69 -2.81 15 2 C 0.07 2.16 4.07 31.35 0.13 2.29 15 3 H 0.09 2.24 8.14 -2.39 -0.02 2.22 15 4 C -0.13 -4.80 5.92 32.14 0.19 -4.61 15 5 C -0.16 -6.44 3.25 -10.28 -0.03 -6.48 15 6 H 0.10 3.72 8.14 -2.39 -0.02 3.70 15 7 C 0.36 18.60 5.72 26.37 0.15 18.76 15 8 O -0.60 -34.05 11.55 -3.52 -0.04 -34.09 15 9 C -0.60 -33.14 9.61 23.50 0.23 -32.92 15 10 H 0.07 3.74 8.06 -2.91 -0.02 3.71 15 11 C 0.03 1.54 5.52 85.43 0.47 2.02 15 12 N -0.81 -45.01 13.64 21.91 0.30 -44.71 15 13 Si 1.15 57.62 26.33 68.60 1.81 59.42 15 14 H -0.29 -14.70 7.11 99.48 0.71 -14.00 15 15 H -0.28 -14.55 6.52 99.48 0.65 -13.90 15 16 H -0.30 -13.86 7.11 99.48 0.71 -13.16 15 17 C 0.08 3.04 7.40 72.45 0.54 3.57 15 18 O -0.40 -14.43 11.04 -148.98 -1.65 -16.08 15 19 H 0.07 1.55 8.14 -2.39 -0.02 1.53 15 20 H 0.09 1.76 8.14 -2.39 -0.02 1.74 15 21 H 0.05 1.33 8.14 -2.39 -0.02 1.32 15 22 H 0.09 2.92 8.14 -2.38 -0.02 2.90 15 23 H 0.07 2.78 7.11 -2.39 -0.02 2.76 15 24 H 0.29 15.13 8.72 -92.71 -0.81 14.32 15 25 H 0.05 2.04 7.81 -2.39 -0.02 2.02 15 26 H 0.08 2.83 8.14 -2.38 -0.02 2.81 15 Total: -1.00 -61.49 223.10 3.84 -57.65 By element: Atomic # 1 Polarization: -3.07 SS G_CDS: 1.06 Total: -2.01 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 2.36 Total: -20.18 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.30 Total: -44.71 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -1.69 Total: -50.17 kcal Atomic # 14 Polarization: 57.62 SS G_CDS: 1.81 Total: 59.42 kcal Total: -61.49 3.84 -57.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162106411.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.669 kcal (2) G-P(sol) polarization free energy of solvation -61.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds