Wall clock time and date at job start Mon Mar 30 2020 01:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.86881 * 2 1 4 4 C 1.54093 * 109.88185 * 121.00672 * 2 1 3 5 5 C 1.54821 * 104.19058 * 121.45284 * 4 2 1 6 6 H 1.08995 * 110.90648 * 262.68654 * 5 4 2 7 7 C 1.50701 * 110.90744 * 139.07704 * 5 4 2 8 8 O 1.21434 * 120.00154 * 335.00793 * 7 5 4 9 9 C 1.41021 * 119.99903 * 155.00066 * 7 5 4 10 10 H 1.08004 * 119.99864 * 0.02562 * 9 7 5 11 11 C 1.40455 * 120.00275 * 180.02562 * 9 7 5 12 12 N 1.30521 * 119.99822 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 120.00180 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47514 * 59.99546 * 13 11 9 15 15 H 1.48500 * 109.47405 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.47045 * 299.99678 * 13 11 9 17 17 C 1.54992 * 102.08569 * 20.88188 * 5 4 2 18 18 O 1.43746 * 109.88194 * 238.84061 * 2 1 3 19 19 H 1.09002 * 109.47153 * 298.99138 * 1 2 3 20 20 H 1.09001 * 109.46832 * 178.99329 * 1 2 3 21 21 H 1.09004 * 109.47261 * 58.99310 * 1 2 3 22 22 H 1.08998 * 110.49245 * 240.13403 * 4 2 1 23 23 H 1.09004 * 110.48949 * 2.78243 * 4 2 1 24 24 H 0.97000 * 119.99575 * 180.02562 * 12 11 9 25 25 H 1.09003 * 110.61852 * 81.48176 * 17 5 4 26 26 H 1.09002 * 110.61609 * 204.31296 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0540 -0.7465 1.2420 5 6 2.9196 -1.8906 0.6600 6 1 2.3540 -2.8212 0.6136 7 6 4.1828 -2.0705 1.4619 8 8 4.6349 -1.1411 2.0994 9 6 4.8398 -3.3183 1.4721 10 1 4.4379 -4.1448 0.9048 11 6 6.0168 -3.4862 2.2198 12 7 6.5023 -2.4875 2.9057 13 14 6.8875 -5.1389 2.2327 14 1 7.2874 -5.4985 0.8486 15 1 8.0966 -5.0548 3.0907 16 1 5.9708 -6.1771 2.7686 17 6 3.2379 -1.3651 -0.7629 18 8 2.0188 -0.6994 -1.1568 19 1 -0.3633 0.4981 0.8989 20 1 -0.3633 -1.0275 -0.0181 21 1 -0.3634 0.5294 -0.8808 22 1 2.6619 -0.0834 1.8575 23 1 1.2247 -1.1525 1.8213 24 1 7.3154 -2.6034 3.4219 25 1 4.0685 -0.6598 -0.7348 26 1 3.4612 -2.1925 -1.4365 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162106507.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:27 Heat of formation + Delta-G solvation = -124.166428 kcal Electronic energy + Delta-G solvation = -11281.846347 eV Core-core repulsion = 9131.098554 eV Total energy + Delta-G solvation = -2150.747794 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.71401 -38.41171 -34.81777 -33.16533 -32.44463 -29.06446 -26.74001 -24.25474 -22.15953 -20.76763 -18.67547 -17.60473 -16.77026 -16.37149 -16.29605 -15.16690 -14.79045 -14.45146 -14.06282 -13.52248 -13.30742 -13.04382 -12.86454 -12.71219 -12.45396 -12.12184 -11.93020 -11.60110 -11.49879 -10.96877 -10.67351 -9.56501 -8.32186 -7.13032 1.36283 1.37991 1.52721 2.13878 2.20626 2.91809 3.28451 3.79343 3.96774 4.04231 4.26373 4.35951 4.49172 4.65381 4.75062 4.82688 4.94122 5.06504 5.11914 5.17740 5.22829 5.31907 5.93030 5.95926 6.70024 6.78244 8.24597 8.48616 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.083103 B = 0.010459 C = 0.009959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.852420 B = 2676.471443 C = 2810.847622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.068 3.932 3 H 0.062 0.938 4 C -0.138 4.138 5 C -0.160 4.160 6 H 0.091 0.909 7 C 0.350 3.650 8 O -0.591 6.591 9 C -0.561 4.561 10 H 0.087 0.913 11 C 0.027 3.973 12 N -0.789 5.789 13 Si 0.993 3.007 14 H -0.252 1.252 15 H -0.270 1.270 16 H -0.253 1.253 17 C 0.075 3.925 18 O -0.388 6.388 19 H 0.085 0.915 20 H 0.062 0.938 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.084 0.916 24 H 0.282 0.718 25 H 0.039 0.961 26 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.502 -1.459 -4.286 7.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.011 3.989 3 H 0.080 0.920 4 C -0.176 4.176 5 C -0.180 4.180 6 H 0.109 0.891 7 C 0.248 3.752 8 O -0.485 6.485 9 C -0.592 4.592 10 H 0.105 0.895 11 C -0.192 4.192 12 N -0.418 5.418 13 Si 0.812 3.188 14 H -0.176 1.176 15 H -0.195 1.195 16 H -0.176 1.176 17 C -0.002 4.002 18 O -0.308 6.308 19 H 0.103 0.897 20 H 0.081 0.919 21 H 0.089 0.911 22 H 0.076 0.924 23 H 0.103 0.897 24 H 0.092 0.908 25 H 0.057 0.943 26 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.317 -0.898 -4.094 7.581 hybrid contribution 0.687 -0.491 0.382 0.927 sum -5.629 -1.388 -3.712 6.885 Atomic orbital electron populations 1.21887 0.91251 1.03129 1.03354 1.22869 0.96782 0.95115 0.84128 0.91966 1.22886 0.99094 0.97280 0.98313 1.23133 0.98518 0.99383 0.96922 0.89073 1.19912 0.85194 0.88867 0.81212 1.90347 1.68105 1.44601 1.45407 1.21359 1.09514 0.99665 1.28679 0.89459 1.27257 0.97403 1.02362 0.92220 1.70079 1.17720 1.34188 1.19807 0.85128 0.77570 0.76215 0.79887 1.17573 1.19463 1.17643 1.23229 0.86646 0.95959 0.94332 1.88747 1.39877 1.67830 1.34300 0.89653 0.91859 0.91071 0.92361 0.89742 0.90773 0.94307 0.87398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.36 71.98 0.67 -2.88 15 2 C 0.07 2.35 4.05 30.96 0.13 2.48 15 3 H 0.06 2.10 8.14 -2.39 -0.02 2.08 15 4 C -0.14 -5.56 6.17 31.59 0.20 -5.37 15 5 C -0.16 -7.19 3.40 -10.24 -0.03 -7.23 15 6 H 0.09 3.80 8.13 -2.39 -0.02 3.79 15 7 C 0.35 19.87 6.09 26.37 0.16 20.03 15 8 O -0.59 -38.52 14.18 -3.51 -0.05 -38.57 15 9 C -0.56 -31.11 9.22 23.49 0.22 -30.90 15 10 H 0.09 4.36 7.85 -2.91 -0.02 4.33 15 11 C 0.03 1.45 5.50 85.43 0.47 1.92 15 12 N -0.79 -46.45 11.72 21.91 0.26 -46.20 15 13 Si 0.99 39.05 29.56 68.60 2.03 41.08 15 14 H -0.25 -9.33 7.11 99.48 0.71 -8.63 15 15 H -0.27 -10.16 7.11 99.48 0.71 -9.45 15 16 H -0.25 -9.38 7.11 99.48 0.71 -8.67 15 17 C 0.07 3.07 7.16 72.66 0.52 3.59 15 18 O -0.39 -14.72 11.19 -148.98 -1.67 -16.39 15 19 H 0.08 1.84 8.14 -2.39 -0.02 1.82 15 20 H 0.06 1.59 8.14 -2.39 -0.02 1.57 15 21 H 0.07 1.62 8.14 -2.38 -0.02 1.60 15 22 H 0.06 2.70 6.85 -2.39 -0.02 2.69 15 23 H 0.08 3.00 7.70 -2.39 -0.02 2.98 15 24 H 0.28 14.87 8.29 -92.71 -0.77 14.10 15 25 H 0.04 1.73 8.04 -2.39 -0.02 1.71 15 26 H 0.11 3.94 8.14 -2.39 -0.02 3.92 15 Total: -1.00 -68.65 226.50 4.06 -64.60 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 1.16 Total: 13.84 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 2.33 Total: -18.36 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.26 Total: -46.20 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -1.72 Total: -54.96 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -68.65 4.06 -64.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162106507.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.569 kcal (2) G-P(sol) polarization free energy of solvation -68.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds