Wall clock time and date at job start Mon Mar 30 2020 01:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.33433 * 2 1 4 4 C 1.54482 * 110.46418 * 237.69076 * 2 1 3 5 5 C 1.54515 * 104.06067 * 217.13917 * 4 2 1 6 6 H 1.09003 * 110.62233 * 118.70379 * 5 4 2 7 7 C 1.50693 * 110.51122 * 241.35471 * 5 4 2 8 8 O 1.21442 * 120.00120 * 26.09674 * 7 5 4 9 9 C 1.41023 * 120.00103 * 206.09776 * 7 5 4 10 10 H 1.08003 * 120.00134 * 6.48011 * 9 7 5 11 11 C 1.40467 * 120.00098 * 186.47636 * 9 7 5 12 12 N 1.30525 * 119.99631 * 174.97377 * 11 9 7 13 13 Si 1.86797 * 120.00182 * 354.97299 * 11 9 7 14 14 H 1.48501 * 109.46951 * 59.99660 * 13 11 9 15 15 H 1.48497 * 109.47122 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46833 * 300.00313 * 13 11 9 17 17 C 1.54477 * 104.06266 * 0.02562 * 5 4 2 18 18 O 1.44421 * 110.37297 * 122.25523 * 2 1 3 19 19 H 1.09005 * 109.47095 * 299.19868 * 1 2 3 20 20 H 1.09000 * 109.47153 * 59.20124 * 1 2 3 21 21 H 1.08997 * 109.47229 * 179.20075 * 1 2 3 22 22 H 1.09003 * 110.51041 * 98.49540 * 4 2 1 23 23 H 1.08998 * 110.51344 * 335.78714 * 4 2 1 24 24 H 0.97002 * 120.00249 * 5.08392 * 12 11 9 25 25 H 1.09000 * 110.36883 * 142.81160 * 17 5 4 26 26 H 1.08998 * 110.37131 * 265.14319 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0701 -0.7736 -1.2233 5 6 3.3208 -1.5031 -0.6838 6 1 3.2026 -2.5832 -0.7709 7 6 4.5555 -1.0474 -1.4177 8 8 4.5878 0.0552 -1.9256 9 6 5.6736 -1.9013 -1.5147 10 1 5.6094 -2.9180 -1.1559 11 6 6.8708 -1.4297 -2.0781 12 7 7.9341 -2.1866 -2.0791 13 14 6.9410 0.2806 -2.8260 14 1 6.6117 1.2891 -1.7869 15 1 8.3072 0.5366 -3.3485 16 1 5.9597 0.3758 -3.9366 17 6 3.3879 -1.0845 0.8017 18 8 2.0328 -0.7225 1.1449 19 1 -0.3633 0.5014 0.8971 20 1 -0.3633 0.5262 -0.8827 21 1 -0.3633 -1.0275 -0.0143 22 1 2.3449 -0.0832 -2.0208 23 1 1.3313 -1.4927 -1.5770 24 1 7.8794 -3.1004 -1.7583 25 1 3.7255 -1.9191 1.4162 26 1 4.0515 -0.2286 0.9251 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162106654.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:29 Heat of formation + Delta-G solvation = -119.181787 kcal Electronic energy + Delta-G solvation = -11379.030128 eV Core-core repulsion = 9228.498485 eV Total energy + Delta-G solvation = -2150.531643 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.29091 -36.92290 -33.17556 -31.76445 -31.10414 -27.08557 -25.38988 -22.36125 -20.83928 -18.97428 -17.61998 -15.76145 -15.34169 -15.00407 -14.33500 -13.82462 -13.40291 -12.79849 -12.64738 -12.19958 -12.00774 -11.67210 -11.30119 -10.74248 -10.50603 -10.27459 -10.20602 -9.97554 -9.42068 -9.30462 -9.12588 -7.84356 -7.04782 -5.29485 3.31406 3.59911 3.98849 4.00007 4.32667 4.43040 5.02411 5.19925 5.29702 5.50246 5.57636 5.77532 5.84232 5.91507 6.07461 6.23776 6.28161 6.38971 6.48243 6.57844 6.72454 7.30472 7.49450 7.77383 8.24598 8.55603 9.78605 10.02418 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.070145 B = 0.012416 C = 0.011387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.075316 B = 2254.674564 C = 2458.285175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 H 0.067 0.933 4 C -0.139 4.139 5 C -0.151 4.151 6 H 0.080 0.920 7 C 0.360 3.640 8 O -0.585 6.585 9 C -0.574 4.574 10 H 0.072 0.928 11 C 0.052 3.948 12 N -0.802 5.802 13 Si 1.139 2.861 14 H -0.285 1.285 15 H -0.325 1.325 16 H -0.287 1.287 17 C 0.067 3.933 18 O -0.384 6.384 19 H 0.057 0.943 20 H 0.067 0.933 21 H 0.059 0.941 22 H 0.090 0.910 23 H 0.063 0.937 24 H 0.282 0.718 25 H 0.088 0.912 26 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.776 1.579 2.676 9.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.012 3.988 3 H 0.085 0.915 4 C -0.176 4.176 5 C -0.171 4.171 6 H 0.099 0.901 7 C 0.263 3.737 8 O -0.485 6.485 9 C -0.605 4.605 10 H 0.090 0.910 11 C -0.169 4.169 12 N -0.428 5.428 13 Si 0.972 3.028 14 H -0.213 1.213 15 H -0.257 1.257 16 H -0.214 1.214 17 C -0.010 4.010 18 O -0.303 6.303 19 H 0.076 0.924 20 H 0.086 0.914 21 H 0.079 0.921 22 H 0.109 0.891 23 H 0.082 0.918 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.913 2.973 2.028 8.693 hybrid contribution -0.910 -1.659 0.739 2.032 sum -8.823 1.314 2.767 9.340 Atomic orbital electron populations 1.21780 0.93928 1.02377 1.01862 1.22963 0.94352 0.95848 0.85601 0.91538 1.22922 0.96281 0.99614 0.98825 1.22823 0.97252 1.00842 0.96171 0.90114 1.19508 0.87171 0.87145 0.79841 1.89811 1.81821 1.25253 1.51615 1.21967 0.99108 1.01166 1.38229 0.90966 1.27716 0.90509 1.07648 0.91026 1.70577 1.30109 1.09176 1.32938 0.82147 0.71610 0.71704 0.77352 1.21273 1.25742 1.21406 1.23188 0.83635 0.99802 0.94331 1.89005 1.27790 1.74779 1.38759 0.92359 0.91421 0.92148 0.89138 0.91782 0.90648 0.89426 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.53 37.16 0.35 -1.57 15 2 C 0.07 1.22 3.92 -25.95 -0.10 1.11 15 3 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 4 C -0.14 -2.64 6.15 -25.16 -0.15 -2.79 15 5 C -0.15 -3.25 3.39 -90.20 -0.31 -3.55 15 6 H 0.08 1.66 8.12 -51.93 -0.42 1.24 15 7 C 0.36 9.37 5.80 -33.26 -0.19 9.18 15 8 O -0.58 -16.32 11.24 5.42 0.06 -16.26 15 9 C -0.57 -15.83 9.65 -37.69 -0.36 -16.20 15 10 H 0.07 1.96 8.06 -52.48 -0.42 1.54 15 11 C 0.05 1.47 5.53 -17.27 -0.10 1.37 15 12 N -0.80 -22.30 13.64 55.57 0.76 -21.54 15 13 Si 1.14 29.33 25.79 -169.99 -4.38 24.95 15 14 H -0.29 -7.48 6.99 56.52 0.39 -7.09 15 15 H -0.32 -8.04 7.11 56.52 0.40 -7.64 15 16 H -0.29 -7.47 7.10 56.52 0.40 -7.07 15 17 C 0.07 1.34 7.17 37.93 0.27 1.61 15 18 O -0.38 -7.35 11.34 -35.23 -0.40 -7.75 15 19 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 20 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.06 0.79 8.13 -51.93 -0.42 0.37 15 22 H 0.09 1.86 6.84 -51.93 -0.36 1.51 15 23 H 0.06 1.08 7.87 -51.93 -0.41 0.67 15 24 H 0.28 7.48 8.72 -40.82 -0.36 7.13 15 25 H 0.09 1.58 8.14 -51.93 -0.42 1.16 15 26 H 0.06 1.26 7.86 -51.93 -0.41 0.85 15 LS Contribution 222.50 15.07 3.35 3.35 Total: -1.00 -29.50 222.50 -4.49 -33.99 By element: Atomic # 1 Polarization: -2.62 SS G_CDS: -3.29 Total: -5.90 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -0.59 Total: -10.84 kcal Atomic # 7 Polarization: -22.30 SS G_CDS: 0.76 Total: -21.54 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.34 Total: -24.01 kcal Atomic # 14 Polarization: 29.33 SS G_CDS: -4.38 Total: 24.95 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -29.50 -4.49 -33.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162106654.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.192 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds