Wall clock time and date at job start Mon Mar 30 2020 02:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46935 * 2 1 4 4 C 1.52997 * 109.46815 * 120.00297 * 2 1 3 5 5 H 1.09005 * 109.46971 * 185.33449 * 4 2 1 6 6 C 1.50700 * 109.46985 * 305.33012 * 4 2 1 7 7 H 1.07999 * 119.99912 * 64.79693 * 6 4 2 8 8 C 1.37883 * 120.00270 * 244.79098 * 6 4 2 9 9 N 1.31508 * 120.00557 * 188.05256 * 8 6 4 10 10 Si 1.86804 * 119.99576 * 8.06105 * 8 6 4 11 11 H 1.48503 * 109.46952 * 269.01652 * 10 8 6 12 12 H 1.48494 * 109.47095 * 29.01531 * 10 8 6 13 13 H 1.48502 * 109.47142 * 149.01810 * 10 8 6 14 14 C 1.52998 * 109.47285 * 65.33237 * 4 2 1 15 15 C 1.54036 * 113.81374 * 156.35831 * 14 4 2 16 16 O 1.44175 * 85.51798 * 223.19435 * 15 14 4 17 17 C 1.44176 * 93.33726 * 24.19427 * 16 15 14 18 18 H 1.09000 * 109.47117 * 305.68235 * 1 2 3 19 19 H 1.09000 * 109.47086 * 65.67609 * 1 2 3 20 20 H 1.08994 * 109.47221 * 185.67620 * 1 2 3 21 21 H 1.08994 * 109.46652 * 240.00224 * 2 1 3 22 22 H 1.09001 * 109.46757 * 184.32138 * 3 2 1 23 23 H 1.08992 * 109.47296 * 304.31987 * 3 2 1 24 24 H 1.08994 * 109.46967 * 64.32123 * 3 2 1 25 25 H 0.96998 * 120.00298 * 180.02562 * 9 8 6 26 26 H 1.09001 * 113.00141 * 288.34454 * 14 4 2 27 27 H 1.08995 * 113.86861 * 337.34399 * 15 14 4 28 28 H 1.09004 * 113.86446 * 109.04813 * 15 14 4 29 29 H 1.09001 * 113.86572 * 221.65895 * 17 16 15 30 30 H 1.09006 * 113.86689 * 89.95393 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1258 -0.6393 1.2983 6 6 1.4327 -0.0912 2.4761 7 1 0.3667 -0.1463 2.6400 8 6 2.2381 0.5555 3.3895 9 7 1.7366 0.9662 4.5337 10 14 4.0418 0.8484 3.0015 11 1 4.8479 -0.2931 3.5038 12 1 4.2185 0.9705 1.5321 13 1 4.4927 2.1007 3.6601 14 6 1.6424 -2.1973 1.1839 15 6 2.5399 -3.1211 2.0287 16 8 2.5036 -4.0077 0.8923 17 6 2.2160 -2.9426 -0.0359 18 1 -0.3633 0.5994 0.8347 19 1 -0.3633 0.4233 -0.9364 20 1 -0.3633 -1.0226 0.1016 21 1 1.8933 -0.5138 -0.8900 22 1 3.1273 1.4435 -0.0774 23 1 1.6149 1.9782 -0.8487 24 1 1.7413 1.9335 0.9261 25 1 2.3031 1.4215 5.1761 26 1 0.5751 -2.3580 1.3360 27 1 3.5275 -2.7086 2.2348 28 1 2.0495 -3.5214 2.9161 29 1 1.4687 -3.2012 -0.7861 30 1 3.1047 -2.4754 -0.4603 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167064085.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:26 Heat of formation + Delta-G solvation = -32.118996 kcal Electronic energy + Delta-G solvation = -11957.783781 eV Core-core repulsion = 9946.860558 eV Total energy + Delta-G solvation = -2010.923223 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.75685 -35.92179 -32.13563 -29.88837 -26.70474 -26.14061 -25.74616 -22.72648 -19.95477 -18.27955 -16.94503 -15.60814 -15.15055 -14.88134 -13.88493 -13.84046 -13.20595 -12.49204 -12.19896 -12.04066 -11.50064 -11.29886 -11.12025 -10.76294 -10.71181 -10.47332 -10.07412 -9.65566 -9.35815 -9.12714 -9.05649 -8.75160 -8.47472 -6.09160 -4.05565 3.25185 3.35951 3.36895 4.39994 4.40595 5.06412 5.33904 5.64088 5.82101 5.90997 5.94876 5.96954 6.05475 6.21134 6.43565 6.47417 6.61493 6.65820 6.72627 6.76401 6.83523 6.97612 7.12378 7.19660 7.31272 7.36262 7.78360 8.52071 8.97278 9.55167 11.03998 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.032558 B = 0.019441 C = 0.015589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.793581 B = 1439.899873 C = 1795.738853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 C -0.141 4.141 4 C 0.016 3.984 5 H 0.036 0.964 6 C -0.498 4.498 7 H 0.076 0.924 8 C 0.073 3.927 9 N -0.900 5.900 10 Si 0.862 3.138 11 H -0.280 1.280 12 H -0.255 1.255 13 H -0.291 1.291 14 C -0.127 4.127 15 C 0.043 3.957 16 O -0.399 6.399 17 C 0.026 3.974 18 H 0.066 0.934 19 H 0.028 0.972 20 H 0.043 0.957 21 H 0.037 0.963 22 H 0.040 0.960 23 H 0.032 0.968 24 H 0.070 0.930 25 H 0.262 0.738 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.306 -2.731 -7.553 8.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.102 4.102 3 C -0.198 4.198 4 C -0.003 4.003 5 H 0.054 0.946 6 C -0.535 4.535 7 H 0.094 0.906 8 C -0.129 4.129 9 N -0.538 5.538 10 Si 0.690 3.310 11 H -0.206 1.206 12 H -0.180 1.180 13 H -0.217 1.217 14 C -0.146 4.146 15 C -0.033 4.033 16 O -0.318 6.318 17 C -0.051 4.051 18 H 0.085 0.915 19 H 0.047 0.953 20 H 0.062 0.938 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.111 0.889 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.381 -2.907 -7.397 8.067 hybrid contribution 1.008 0.449 0.013 1.104 sum 2.389 -2.458 -7.384 8.141 Atomic orbital electron populations 1.21727 0.96220 1.00883 1.00092 1.21128 0.95564 0.95848 0.97693 1.21840 0.99424 0.97156 1.01349 1.19346 0.96195 0.90023 0.94691 0.94610 1.20891 0.95850 1.33889 1.02915 0.90640 1.25062 0.97772 0.95454 0.94571 1.69909 1.36401 1.40164 1.07371 0.87154 0.86526 0.77906 0.79450 1.20644 1.18008 1.21724 1.24294 1.00378 0.98051 0.91840 1.23911 0.99461 0.89216 0.90739 1.89526 1.93737 1.28966 1.19612 1.24075 0.99027 0.87478 0.94498 0.91520 0.95302 0.93815 0.94430 0.94133 0.94870 0.91114 0.92770 0.88927 0.91000 0.89704 0.90425 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.57 37.16 0.32 -2.11 16 2 C -0.08 -1.62 2.58 -90.62 -0.23 -1.85 16 3 C -0.14 -2.74 8.20 37.16 0.30 -2.43 16 4 C 0.02 0.36 1.27 -91.77 -0.12 0.24 16 5 H 0.04 0.81 4.59 -51.93 -0.24 0.57 16 6 C -0.50 -12.82 6.80 -34.44 -0.23 -13.05 16 7 H 0.08 2.13 7.26 -52.49 -0.38 1.75 16 8 C 0.07 1.98 5.43 -17.82 -0.10 1.89 16 9 N -0.90 -26.52 13.96 55.43 0.77 -25.74 16 10 Si 0.86 20.64 26.35 -169.99 -4.48 16.16 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.26 -5.75 5.06 56.52 0.29 -5.47 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 14 C -0.13 -2.50 2.71 -89.54 -0.24 -2.75 16 15 C 0.04 0.85 8.77 37.61 0.33 1.18 16 16 O -0.40 -7.80 12.45 -35.23 -0.44 -8.24 16 17 C 0.03 0.45 7.76 37.60 0.29 0.75 16 18 H 0.07 1.36 6.91 -51.93 -0.36 1.00 16 19 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 20 H 0.04 0.77 6.67 -51.93 -0.35 0.42 16 21 H 0.04 0.66 7.25 -51.93 -0.38 0.29 16 22 H 0.04 0.78 6.79 -51.93 -0.35 0.43 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.07 1.54 7.15 -51.93 -0.37 1.17 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 26 H 0.09 1.85 7.23 -51.93 -0.38 1.47 16 27 H 0.07 1.42 7.96 -51.93 -0.41 1.01 16 28 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.18 8.05 -51.93 -0.42 0.76 16 LS Contribution 234.86 15.07 3.54 3.54 Total: -1.00 -28.01 234.86 -4.86 -32.86 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.57 Total: -0.45 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 0.32 Total: -18.14 kcal Atomic # 7 Polarization: -26.52 SS G_CDS: 0.77 Total: -25.74 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.44 Total: -8.24 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.48 Total: 16.16 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -28.01 -4.86 -32.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167064085.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.746 kcal (2) G-P(sol) polarization free energy of solvation -28.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds