Wall clock time and date at job start Mon Mar 30 2020 02:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46935 * 2 1 4 4 C 1.52997 * 109.46815 * 120.00297 * 2 1 3 5 5 H 1.09005 * 109.46971 * 185.33449 * 4 2 1 6 6 C 1.50700 * 109.46985 * 305.33012 * 4 2 1 7 7 H 1.07999 * 119.99912 * 64.79693 * 6 4 2 8 8 C 1.37883 * 120.00270 * 244.79098 * 6 4 2 9 9 N 1.31508 * 120.00557 * 188.05256 * 8 6 4 10 10 Si 1.86804 * 119.99576 * 8.06105 * 8 6 4 11 11 H 1.48503 * 109.46952 * 269.01652 * 10 8 6 12 12 H 1.48494 * 109.47095 * 29.01531 * 10 8 6 13 13 H 1.48502 * 109.47142 * 149.01810 * 10 8 6 14 14 C 1.52998 * 109.47285 * 65.33237 * 4 2 1 15 15 C 1.54036 * 113.81374 * 156.35831 * 14 4 2 16 16 O 1.44175 * 85.51798 * 223.19435 * 15 14 4 17 17 C 1.44176 * 93.33726 * 24.19427 * 16 15 14 18 18 H 1.09000 * 109.47117 * 305.68235 * 1 2 3 19 19 H 1.09000 * 109.47086 * 65.67609 * 1 2 3 20 20 H 1.08994 * 109.47221 * 185.67620 * 1 2 3 21 21 H 1.08994 * 109.46652 * 240.00224 * 2 1 3 22 22 H 1.09001 * 109.46757 * 184.32138 * 3 2 1 23 23 H 1.08992 * 109.47296 * 304.31987 * 3 2 1 24 24 H 1.08994 * 109.46967 * 64.32123 * 3 2 1 25 25 H 0.96998 * 120.00298 * 180.02562 * 9 8 6 26 26 H 1.09001 * 113.00141 * 288.34454 * 14 4 2 27 27 H 1.08995 * 113.86861 * 337.34399 * 15 14 4 28 28 H 1.09004 * 113.86446 * 109.04813 * 15 14 4 29 29 H 1.09001 * 113.86572 * 221.65895 * 17 16 15 30 30 H 1.09006 * 113.86689 * 89.95393 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1258 -0.6393 1.2983 6 6 1.4327 -0.0912 2.4761 7 1 0.3667 -0.1463 2.6400 8 6 2.2381 0.5555 3.3895 9 7 1.7366 0.9662 4.5337 10 14 4.0418 0.8484 3.0015 11 1 4.8479 -0.2931 3.5038 12 1 4.2185 0.9705 1.5321 13 1 4.4927 2.1007 3.6601 14 6 1.6424 -2.1973 1.1839 15 6 2.5399 -3.1211 2.0287 16 8 2.5036 -4.0077 0.8923 17 6 2.2160 -2.9426 -0.0359 18 1 -0.3633 0.5994 0.8347 19 1 -0.3633 0.4233 -0.9364 20 1 -0.3633 -1.0226 0.1016 21 1 1.8933 -0.5138 -0.8900 22 1 3.1273 1.4435 -0.0774 23 1 1.6149 1.9782 -0.8487 24 1 1.7413 1.9335 0.9261 25 1 2.3031 1.4215 5.1761 26 1 0.5751 -2.3580 1.3360 27 1 3.5275 -2.7086 2.2348 28 1 2.0495 -3.5214 2.9161 29 1 1.4687 -3.2012 -0.7861 30 1 3.1047 -2.4754 -0.4603 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167064085.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:26 Heat of formation + Delta-G solvation = -50.227276 kcal Electronic energy + Delta-G solvation = -11958.569015 eV Core-core repulsion = 9946.860558 eV Total energy + Delta-G solvation = -2011.708457 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.27779 -37.56363 -34.15847 -31.49485 -28.43107 -27.72468 -27.24781 -24.51350 -21.51003 -19.93940 -18.89250 -17.11714 -16.78890 -16.41018 -15.75011 -15.49230 -14.86781 -14.32682 -13.73062 -13.53607 -13.19602 -13.01668 -12.85635 -12.40442 -12.31459 -12.06078 -11.72436 -11.50091 -11.03048 -10.79442 -10.71404 -10.46269 -10.39681 -8.20018 -6.17868 1.34441 1.39629 1.47386 2.40166 2.92582 3.14329 3.70165 4.08303 4.36246 4.39773 4.48485 4.51174 4.55117 4.75849 4.84828 4.98662 5.09528 5.13335 5.21043 5.29443 5.30494 5.36818 5.52613 5.58638 5.66271 5.73097 5.91834 6.44301 6.88053 7.45311 8.96962 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.032558 B = 0.019441 C = 0.015589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.793581 B = 1439.899873 C = 1795.738853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.085 4.085 3 C -0.140 4.140 4 C 0.016 3.984 5 H 0.033 0.967 6 C -0.480 4.480 7 H 0.037 0.963 8 C 0.016 3.984 9 N -0.954 5.954 10 Si 0.914 3.086 11 H -0.276 1.276 12 H -0.228 1.228 13 H -0.299 1.299 14 C -0.133 4.133 15 C 0.038 3.962 16 O -0.409 6.409 17 C 0.038 3.962 18 H 0.033 0.967 19 H 0.056 0.944 20 H 0.048 0.952 21 H 0.070 0.930 22 H 0.043 0.957 23 H 0.060 0.940 24 H 0.037 0.963 25 H 0.260 0.740 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.280 -3.377 -10.128 10.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.104 4.104 3 C -0.197 4.197 4 C -0.003 4.003 5 H 0.051 0.949 6 C -0.518 4.518 7 H 0.055 0.945 8 C -0.180 4.180 9 N -0.596 5.596 10 Si 0.740 3.260 11 H -0.202 1.202 12 H -0.151 1.151 13 H -0.226 1.226 14 C -0.152 4.152 15 C -0.038 4.038 16 O -0.328 6.328 17 C -0.038 4.038 18 H 0.052 0.948 19 H 0.075 0.925 20 H 0.067 0.933 21 H 0.088 0.912 22 H 0.062 0.938 23 H 0.079 0.921 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.354 -3.568 -10.009 10.883 hybrid contribution 0.599 0.626 0.791 1.173 sum 2.953 -2.942 -9.218 10.117 Atomic orbital electron populations 1.21659 0.95722 1.00856 1.00214 1.21139 0.96031 0.95767 0.97421 1.21820 0.99779 0.97257 1.00886 1.19347 0.95684 0.91332 0.93943 0.94884 1.21088 0.94097 1.32497 1.04110 0.94453 1.25785 1.01957 0.95856 0.94416 1.70060 1.38052 1.42544 1.08918 0.86301 0.81644 0.77344 0.80727 1.20233 1.15133 1.22617 1.24241 1.00136 0.96661 0.94119 1.23932 0.99401 0.89394 0.91084 1.89522 1.93834 1.29589 1.19877 1.24211 1.00021 0.85853 0.93728 0.94774 0.92463 0.93290 0.91185 0.93779 0.92072 0.94392 0.93118 0.89650 0.91087 0.89814 0.87684 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 8.57 71.98 0.62 -3.78 16 2 C -0.08 -3.02 2.58 -10.79 -0.03 -3.05 16 3 C -0.14 -5.07 8.20 71.98 0.59 -4.48 16 4 C 0.02 0.66 1.27 -11.54 -0.01 0.65 16 5 H 0.03 1.40 4.59 -2.38 -0.01 1.39 16 6 C -0.48 -25.01 6.80 25.60 0.17 -24.84 16 7 H 0.04 2.19 7.26 -2.91 -0.02 2.17 16 8 C 0.02 0.88 5.43 84.66 0.46 1.34 16 9 N -0.95 -58.22 13.96 21.45 0.30 -57.92 16 10 Si 0.91 42.29 26.35 68.60 1.81 44.09 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.23 -9.44 5.06 99.48 0.50 -8.94 16 13 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 14 C -0.13 -4.95 2.71 -10.10 -0.03 -4.98 16 15 C 0.04 1.45 8.77 72.27 0.63 2.08 16 16 O -0.41 -14.79 12.45 -148.98 -1.86 -16.65 16 17 C 0.04 1.17 7.76 72.27 0.56 1.73 16 18 H 0.03 1.38 6.91 -2.39 -0.02 1.36 16 19 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 20 H 0.05 1.61 6.67 -2.39 -0.02 1.60 16 21 H 0.07 2.10 7.25 -2.39 -0.02 2.08 16 22 H 0.04 1.53 6.79 -2.39 -0.02 1.52 16 23 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 24 H 0.04 1.60 7.15 -2.39 -0.02 1.58 16 25 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 26 H 0.09 3.30 7.23 -2.39 -0.02 3.28 16 27 H 0.07 2.68 7.96 -2.39 -0.02 2.66 16 28 H 0.08 3.11 8.14 -2.38 -0.02 3.09 16 29 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.09 2.43 8.05 -2.38 -0.02 2.41 16 Total: -1.00 -60.56 234.86 4.12 -56.44 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.90 Total: 9.36 kcal Atomic # 6 Polarization: -38.30 SS G_CDS: 2.97 Total: -35.33 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.30 Total: -57.92 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -1.86 Total: -16.65 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.81 Total: 44.09 kcal Total: -60.56 4.12 -56.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167064085.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.216 kcal (2) G-P(sol) polarization free energy of solvation -60.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds