Wall clock time and date at job start Mon Mar 30 2020 02:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47516 * 2 1 4 4 C 1.52999 * 109.47115 * 119.99904 * 2 1 3 5 5 H 1.09004 * 109.47297 * 295.75315 * 4 2 1 6 6 C 1.50697 * 109.47546 * 175.74772 * 4 2 1 7 7 H 1.07996 * 119.99790 * 304.75863 * 6 4 2 8 8 C 1.37872 * 120.00390 * 124.75290 * 6 4 2 9 9 N 1.31512 * 120.00648 * 184.62378 * 8 6 4 10 10 Si 1.86811 * 119.99726 * 4.62262 * 8 6 4 11 11 H 1.48501 * 109.46919 * 84.43828 * 10 8 6 12 12 H 1.48494 * 109.46932 * 204.43526 * 10 8 6 13 13 H 1.48498 * 109.46949 * 324.43570 * 10 8 6 14 14 C 1.53001 * 109.47007 * 55.74702 * 4 2 1 15 15 C 1.54042 * 113.81738 * 278.50910 * 14 4 2 16 16 O 1.44453 * 85.42488 * 223.23584 * 15 14 4 17 17 C 1.44177 * 93.37984 * 24.08953 * 16 15 14 18 18 H 1.09005 * 109.47297 * 300.00320 * 1 2 3 19 19 H 1.08997 * 109.47179 * 60.00041 * 1 2 3 20 20 H 1.08993 * 109.47483 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46805 * 239.99487 * 2 1 3 22 22 H 1.09004 * 109.46765 * 305.03112 * 3 2 1 23 23 H 1.09000 * 109.47392 * 65.02850 * 3 2 1 24 24 H 1.08999 * 109.47213 * 185.03192 * 3 2 1 25 25 H 0.97002 * 120.00545 * 180.02562 * 9 8 6 26 26 H 1.09000 * 113.00205 * 50.33197 * 14 4 2 27 27 H 1.09003 * 113.86197 * 337.33835 * 15 14 4 28 28 H 1.08993 * 113.86636 * 109.05246 * 15 14 4 29 29 H 1.09003 * 113.86386 * 221.76825 * 17 16 15 30 30 H 1.09002 * 113.87132 * 90.06142 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7401 -0.1653 2.1376 6 6 3.5433 -0.8132 1.1978 7 1 4.0278 -1.2641 0.3444 8 6 4.3001 -0.3215 2.2400 9 7 5.6125 -0.3188 2.1557 10 14 3.4613 0.3409 3.7722 11 1 3.1572 -0.7823 4.6948 12 1 4.3611 1.3084 4.4500 13 1 2.1990 1.0230 3.3897 14 6 1.4445 -2.1295 1.3039 15 6 0.0139 -2.1783 1.8729 16 8 0.4700 -3.3348 2.6086 17 6 1.8526 -2.9294 2.5555 18 1 -0.3634 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.6050 1.9816 -0.8415 23 1 1.7522 1.9297 0.9316 24 1 3.1263 1.4437 -0.0901 25 1 6.1450 0.0268 2.8892 26 1 1.5660 -2.6799 0.3709 27 1 -0.2391 -1.3261 2.5036 28 1 -0.7497 -2.4012 1.1278 29 1 2.5442 -3.7466 2.3505 30 1 2.1623 -2.3069 3.3950 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167064158.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:28 Heat of formation + Delta-G solvation = -31.137091 kcal Electronic energy + Delta-G solvation = -11987.214198 eV Core-core repulsion = 9976.333554 eV Total energy + Delta-G solvation = -2010.880644 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.73612 -35.80170 -32.31986 -29.88079 -27.54535 -25.72402 -25.37270 -22.72874 -19.34872 -18.97296 -17.03195 -15.74178 -15.07500 -14.95799 -14.24257 -13.21170 -13.12007 -12.48568 -12.36850 -11.88451 -11.69036 -11.61713 -11.12757 -10.84154 -10.76501 -10.34307 -10.14916 -9.70697 -9.38160 -9.15631 -8.96871 -8.86324 -8.45934 -6.10748 -4.08208 3.22832 3.31465 3.33293 4.36878 4.44650 5.10476 5.33957 5.56462 5.81138 5.84364 5.86177 5.96934 6.06455 6.20013 6.33192 6.49347 6.49877 6.56081 6.58867 6.77314 6.85066 6.95251 7.00933 7.16956 7.33454 7.38233 7.74761 8.50540 8.95364 9.52774 11.02852 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.031227 B = 0.021227 C = 0.015648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.457271 B = 1318.764361 C = 1788.927786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.083 4.083 3 C -0.132 4.132 4 C 0.011 3.989 5 H 0.042 0.958 6 C -0.499 4.499 7 H 0.073 0.927 8 C 0.074 3.926 9 N -0.901 5.901 10 Si 0.864 3.136 11 H -0.274 1.274 12 H -0.290 1.290 13 H -0.262 1.262 14 C -0.131 4.131 15 C 0.026 3.974 16 O -0.403 6.403 17 C 0.048 3.952 18 H 0.045 0.955 19 H 0.039 0.961 20 H 0.053 0.947 21 H 0.058 0.942 22 H 0.031 0.969 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.263 0.737 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.650 0.262 -1.177 8.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.102 4.102 3 C -0.190 4.190 4 C -0.008 4.008 5 H 0.061 0.939 6 C -0.537 4.537 7 H 0.091 0.909 8 C -0.127 4.127 9 N -0.538 5.538 10 Si 0.693 3.307 11 H -0.200 1.200 12 H -0.216 1.216 13 H -0.188 1.188 14 C -0.149 4.149 15 C -0.051 4.051 16 O -0.323 6.323 17 C -0.029 4.029 18 H 0.064 0.936 19 H 0.058 0.942 20 H 0.072 0.928 21 H 0.077 0.923 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.593 0.092 -0.962 8.647 hybrid contribution -0.179 0.541 0.842 1.016 sum -8.772 0.633 -0.120 8.796 Atomic orbital electron populations 1.22119 0.97941 1.00917 1.00203 1.21137 0.92490 0.96434 1.00109 1.21674 1.02408 0.95812 0.99057 1.19484 0.96621 0.90185 0.94469 0.93946 1.20873 0.88355 1.38825 1.05668 0.90906 1.25041 0.94594 0.95186 0.97899 1.69888 1.04491 1.47005 1.32466 0.87118 0.79839 0.79591 0.84165 1.19975 1.21642 1.18767 1.24352 0.91917 1.00444 0.98233 1.24320 0.98447 0.88261 0.94030 1.89563 1.22212 1.41354 1.79147 1.23887 0.83221 0.97812 0.97938 0.93621 0.94156 0.92769 0.92329 0.95015 0.94183 0.91365 0.92670 0.89476 0.91150 0.90256 0.89811 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.13 37.16 0.30 -2.18 16 2 C -0.08 -1.61 2.50 -90.62 -0.23 -1.83 16 3 C -0.13 -2.56 8.91 37.16 0.33 -2.23 16 4 C 0.01 0.25 1.15 -91.77 -0.11 0.14 16 5 H 0.04 0.97 4.32 -51.93 -0.22 0.75 16 6 C -0.50 -13.07 7.45 -34.44 -0.26 -13.32 16 7 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 8 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 9 N -0.90 -26.59 13.96 55.43 0.77 -25.82 16 10 Si 0.86 20.87 26.00 -169.99 -4.42 16.45 16 11 H -0.27 -6.48 6.77 56.52 0.38 -6.10 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.26 -6.06 6.22 56.52 0.35 -5.71 16 14 C -0.13 -2.61 2.88 -89.53 -0.26 -2.86 16 15 C 0.03 0.46 6.66 37.65 0.25 0.71 16 16 O -0.40 -8.16 12.46 -35.23 -0.44 -8.60 16 17 C 0.05 0.99 8.33 37.65 0.31 1.30 16 18 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 19 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.81 5.02 -51.93 -0.26 0.55 16 21 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 1.47 7.52 -51.93 -0.39 1.08 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 27 H 0.07 1.22 7.99 -51.93 -0.41 0.81 16 28 H 0.08 1.21 7.02 -51.93 -0.36 0.85 16 29 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 30 H 0.07 1.63 6.25 -51.93 -0.32 1.30 16 LS Contribution 235.49 15.07 3.55 3.55 Total: -1.00 -28.18 235.49 -4.85 -33.03 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -4.57 Total: -0.28 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 0.25 Total: -18.33 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.77 Total: -25.82 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.44 Total: -8.60 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.42 Total: 16.45 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.18 -4.85 -33.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167064158.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.894 kcal (2) G-P(sol) polarization free energy of solvation -28.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds