Wall clock time and date at job start Mon Mar 30 2020 02:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47516 * 2 1 4 4 C 1.52999 * 109.47115 * 119.99904 * 2 1 3 5 5 H 1.09004 * 109.47297 * 295.75315 * 4 2 1 6 6 C 1.50697 * 109.47546 * 175.74772 * 4 2 1 7 7 H 1.07996 * 119.99790 * 304.75863 * 6 4 2 8 8 C 1.37872 * 120.00390 * 124.75290 * 6 4 2 9 9 N 1.31512 * 120.00648 * 184.62378 * 8 6 4 10 10 Si 1.86811 * 119.99726 * 4.62262 * 8 6 4 11 11 H 1.48501 * 109.46919 * 84.43828 * 10 8 6 12 12 H 1.48494 * 109.46932 * 204.43526 * 10 8 6 13 13 H 1.48498 * 109.46949 * 324.43570 * 10 8 6 14 14 C 1.53001 * 109.47007 * 55.74702 * 4 2 1 15 15 C 1.54042 * 113.81738 * 278.50910 * 14 4 2 16 16 O 1.44453 * 85.42488 * 223.23584 * 15 14 4 17 17 C 1.44177 * 93.37984 * 24.08953 * 16 15 14 18 18 H 1.09005 * 109.47297 * 300.00320 * 1 2 3 19 19 H 1.08997 * 109.47179 * 60.00041 * 1 2 3 20 20 H 1.08993 * 109.47483 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46805 * 239.99487 * 2 1 3 22 22 H 1.09004 * 109.46765 * 305.03112 * 3 2 1 23 23 H 1.09000 * 109.47392 * 65.02850 * 3 2 1 24 24 H 1.08999 * 109.47213 * 185.03192 * 3 2 1 25 25 H 0.97002 * 120.00545 * 180.02562 * 9 8 6 26 26 H 1.09000 * 113.00205 * 50.33197 * 14 4 2 27 27 H 1.09003 * 113.86197 * 337.33835 * 15 14 4 28 28 H 1.08993 * 113.86636 * 109.05246 * 15 14 4 29 29 H 1.09003 * 113.86386 * 221.76825 * 17 16 15 30 30 H 1.09002 * 113.87132 * 90.06142 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7401 -0.1653 2.1376 6 6 3.5433 -0.8132 1.1978 7 1 4.0278 -1.2641 0.3444 8 6 4.3001 -0.3215 2.2400 9 7 5.6125 -0.3188 2.1557 10 14 3.4613 0.3409 3.7722 11 1 3.1572 -0.7823 4.6948 12 1 4.3611 1.3084 4.4500 13 1 2.1990 1.0230 3.3897 14 6 1.4445 -2.1295 1.3039 15 6 0.0139 -2.1783 1.8729 16 8 0.4700 -3.3348 2.6086 17 6 1.8526 -2.9294 2.5555 18 1 -0.3634 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.6050 1.9816 -0.8415 23 1 1.7522 1.9297 0.9316 24 1 3.1263 1.4437 -0.0901 25 1 6.1450 0.0268 2.8892 26 1 1.5660 -2.6799 0.3709 27 1 -0.2391 -1.3261 2.5036 28 1 -0.7497 -2.4012 1.1278 29 1 2.5442 -3.7466 2.3505 30 1 2.1623 -2.3069 3.3950 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167064158.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:28 Heat of formation + Delta-G solvation = -49.512159 kcal Electronic energy + Delta-G solvation = -11988.011001 eV Core-core repulsion = 9976.333554 eV Total energy + Delta-G solvation = -2011.677447 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.30333 -37.42680 -34.34130 -31.53387 -29.15936 -27.40773 -26.82538 -24.54706 -20.90141 -20.61588 -19.06320 -17.25604 -16.75558 -16.58595 -16.03209 -14.89393 -14.79245 -14.24774 -13.98163 -13.47142 -13.35773 -13.08549 -12.70135 -12.66505 -12.28690 -11.93974 -11.72365 -11.61913 -11.10346 -10.87153 -10.75957 -10.53873 -10.34007 -8.24065 -6.23534 1.31560 1.33832 1.41264 2.34702 2.92053 3.10944 3.70551 4.01667 4.35437 4.41620 4.44894 4.49284 4.52636 4.73472 4.85532 4.94440 4.99599 5.09888 5.20862 5.24691 5.33393 5.35990 5.43016 5.56833 5.67367 5.73107 5.84970 6.39594 6.82438 7.40114 8.93497 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.031227 B = 0.021227 C = 0.015648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.457271 B = 1318.764361 C = 1788.927786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.130 4.130 4 C 0.012 3.988 5 H 0.039 0.961 6 C -0.487 4.487 7 H 0.031 0.969 8 C 0.020 3.980 9 N -0.953 5.953 10 Si 0.916 3.084 11 H -0.265 1.265 12 H -0.295 1.295 13 H -0.240 1.240 14 C -0.134 4.134 15 C 0.037 3.963 16 O -0.412 6.412 17 C 0.041 3.959 18 H 0.052 0.948 19 H 0.061 0.939 20 H 0.066 0.934 21 H 0.049 0.951 22 H 0.061 0.939 23 H 0.039 0.961 24 H 0.032 0.968 25 H 0.262 0.738 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.084 0.916 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.514 0.642 -1.095 11.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 C -0.188 4.188 4 C -0.007 4.007 5 H 0.057 0.943 6 C -0.526 4.526 7 H 0.049 0.951 8 C -0.176 4.176 9 N -0.594 5.594 10 Si 0.742 3.258 11 H -0.191 1.191 12 H -0.222 1.222 13 H -0.164 1.164 14 C -0.152 4.152 15 C -0.038 4.038 16 O -0.331 6.331 17 C -0.036 4.036 18 H 0.071 0.929 19 H 0.080 0.920 20 H 0.085 0.915 21 H 0.068 0.932 22 H 0.080 0.920 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.131 0.869 29 H 0.102 0.898 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.492 0.468 -0.891 11.536 hybrid contribution 0.739 0.390 0.712 1.098 sum -10.753 0.858 -0.179 10.789 Atomic orbital electron populations 1.22030 0.94443 1.02257 1.01701 1.21098 0.95450 0.95736 0.98132 1.21644 1.00292 0.96455 1.00378 1.19464 0.93577 0.91927 0.95716 0.94288 1.21077 0.90984 1.36841 1.03648 0.95097 1.25748 0.94893 0.96004 1.00973 1.70038 1.06277 1.49429 1.33609 0.86265 0.79596 0.79269 0.80690 1.19077 1.22185 1.16388 1.24301 0.94037 0.98708 0.98194 1.24472 0.97390 0.87863 0.94123 1.89560 1.21601 1.42398 1.79577 1.23852 0.83865 0.97944 0.97894 0.92881 0.91975 0.91512 0.93226 0.91979 0.94191 0.94861 0.92894 0.89185 0.90100 0.86884 0.89810 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 8.13 71.98 0.59 -3.47 16 2 C -0.09 -3.12 2.50 -10.80 -0.03 -3.14 16 3 C -0.13 -4.82 8.91 71.98 0.64 -4.18 16 4 C 0.01 0.51 1.15 -11.54 -0.01 0.50 16 5 H 0.04 1.69 4.32 -2.38 -0.01 1.68 16 6 C -0.49 -25.96 7.45 25.60 0.19 -25.77 16 7 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 8 C 0.02 1.13 5.47 84.65 0.46 1.59 16 9 N -0.95 -58.24 13.96 21.45 0.30 -57.94 16 10 Si 0.92 42.72 26.00 68.60 1.78 44.51 16 11 H -0.27 -11.95 6.77 99.48 0.67 -11.28 16 12 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 13 H -0.24 -10.23 6.22 99.48 0.62 -9.61 16 14 C -0.13 -5.04 2.88 -10.09 -0.03 -5.07 16 15 C 0.04 1.18 6.66 72.30 0.48 1.66 16 16 O -0.41 -15.48 12.46 -148.98 -1.86 -17.33 16 17 C 0.04 1.64 8.33 72.30 0.60 2.24 16 18 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 19 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 20 H 0.07 1.66 5.02 -2.39 -0.01 1.65 16 21 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 22 H 0.06 1.88 8.14 -2.38 -0.02 1.87 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.03 1.42 7.52 -2.39 -0.02 1.41 16 25 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 26 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 27 H 0.08 2.42 7.99 -2.39 -0.02 2.40 16 28 H 0.11 2.83 7.02 -2.39 -0.02 2.82 16 29 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 30 H 0.06 2.62 6.25 -2.39 -0.01 2.60 16 Total: -1.00 -61.22 235.49 4.10 -57.12 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.98 Total: 9.29 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 2.89 Total: -35.64 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.30 Total: -57.94 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -1.86 Total: -17.33 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.78 Total: 44.51 kcal Total: -61.22 4.10 -57.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167064158.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.607 kcal (2) G-P(sol) polarization free energy of solvation -61.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds