Wall clock time and date at job start Mon Mar 30 2020 01:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86795 * 119.99725 * 2 1 4 4 H 1.48504 * 109.47306 * 240.00138 * 3 2 1 5 5 H 1.48499 * 109.47734 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47059 * 120.00331 * 3 2 1 7 7 C 1.38945 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99693 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00470 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00296 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99903 * 354.99875 * 10 9 7 12 12 C 1.50698 * 119.99932 * 175.27061 * 10 9 7 13 13 C 1.53007 * 115.54866 * 304.06141 * 12 10 9 14 14 N 1.46897 * 109.47423 * 294.92323 * 13 12 10 15 15 C 1.52997 * 117.49792 * 158.39589 * 12 10 9 16 16 C 1.52998 * 117.49941 * 89.73508 * 12 10 9 17 17 H 0.97000 * 119.99774 * 0.02562 * 1 2 3 18 18 H 0.96997 * 119.99653 * 359.97438 * 9 7 2 19 19 H 1.08998 * 109.46764 * 54.92909 * 13 12 10 20 20 H 1.08995 * 109.46702 * 174.92481 * 13 12 10 21 21 H 1.00899 * 110.99919 * 174.82204 * 14 13 12 22 22 H 1.00900 * 110.99964 * 298.78010 * 14 13 12 23 23 H 1.08998 * 117.49793 * 0.02562 * 15 12 10 24 24 H 1.09002 * 117.49958 * 145.01423 * 15 12 10 25 25 H 1.09005 * 117.49426 * 214.97635 * 16 12 10 26 26 H 1.08994 * 117.50059 * 359.97438 * 16 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0026 11 8 3.2068 -3.5597 -0.0942 12 6 1.2477 -4.8608 0.1038 13 6 0.3327 -4.9980 1.3224 14 7 1.1445 -5.0003 2.5466 15 6 1.9515 -6.1236 -0.3969 16 6 0.7939 -5.5232 -1.1986 17 1 -0.4850 0.8401 -0.0004 18 1 0.3535 -2.3906 -0.0016 19 1 -0.3639 -4.1600 1.3498 20 1 -0.2251 -5.9319 1.2545 21 1 0.5593 -5.0050 3.3686 22 1 1.7850 -5.7800 2.5543 23 1 2.9569 -6.0121 -0.8029 24 1 1.7623 -7.0523 0.1416 25 1 -0.1563 -6.0571 -1.1871 26 1 1.0372 -5.0164 -2.1323 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168716966.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:30 Heat of formation + Delta-G solvation = -44.347538 kcal Electronic energy + Delta-G solvation = -11217.629137 eV Core-core repulsion = 9102.635301 eV Total energy + Delta-G solvation = -2114.993836 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.65901 -37.78638 -35.93171 -34.19231 -33.17303 -27.75918 -26.19608 -23.58130 -23.22755 -20.26472 -19.59831 -17.86687 -16.89003 -16.54285 -15.91942 -15.57052 -15.48361 -14.83939 -14.46168 -13.68173 -13.53479 -12.97563 -12.89522 -12.44272 -12.39849 -12.12771 -11.54235 -11.35364 -10.99328 -10.33727 -9.99180 -9.47213 -8.45383 -5.93845 1.39527 1.40241 1.52084 2.02675 2.30755 2.80571 3.21482 3.24877 3.59112 3.91826 4.03690 4.23179 4.38510 4.65724 4.72948 4.81912 4.97306 5.06452 5.27686 5.40877 6.01630 6.31343 6.61295 6.71099 7.13466 7.59969 8.15647 8.72233 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.056633 B = 0.011412 C = 0.011005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.292093 B = 2452.938010 C = 2543.589348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.074 0.926 9 N -0.563 5.563 10 C 0.486 3.514 11 O -0.643 6.643 12 C -0.163 4.163 13 C 0.115 3.885 14 N -0.863 5.863 15 C -0.139 4.139 16 C -0.144 4.144 17 H 0.278 0.722 18 H 0.394 0.606 19 H 0.063 0.937 20 H 0.069 0.931 21 H 0.352 0.648 22 H 0.347 0.653 23 H 0.077 0.923 24 H 0.130 0.870 25 H 0.136 0.864 26 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 -9.449 1.392 10.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.191 1.191 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.092 0.908 9 N -0.197 5.197 10 C 0.274 3.726 11 O -0.531 6.531 12 C -0.167 4.167 13 C -0.016 4.016 14 N -0.395 5.395 15 C -0.176 4.176 16 C -0.182 4.182 17 H 0.087 0.913 18 H 0.228 0.772 19 H 0.081 0.919 20 H 0.087 0.913 21 H 0.167 0.833 22 H 0.160 0.840 23 H 0.095 0.905 24 H 0.148 0.852 25 H 0.154 0.846 26 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.919 -8.558 1.102 9.109 hybrid contribution -0.361 0.154 0.180 0.432 sum -3.280 -8.404 1.282 9.112 Atomic orbital electron populations 1.69678 1.06815 1.29320 1.50309 1.26053 0.96600 1.02380 0.96230 0.84983 0.77793 0.76564 0.78924 1.19710 1.19146 1.19746 1.19635 0.92551 0.84263 1.50080 0.90753 1.41762 1.09053 1.04464 1.64471 1.19702 0.86973 0.85139 0.80794 1.90439 1.16665 1.88099 1.57912 1.21411 1.04368 0.92230 0.98686 1.21129 0.92489 1.01080 0.86935 1.58337 1.23850 1.53099 1.04229 1.22932 0.96978 0.95165 1.02521 1.23140 1.00502 1.01866 0.92727 0.91276 0.77232 0.91891 0.91338 0.83309 0.83995 0.90456 0.85206 0.84564 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.48 13.05 21.66 0.28 -51.20 15 2 C -0.01 -0.73 5.50 84.92 0.47 -0.26 15 3 Si 0.99 44.55 29.55 68.60 2.03 46.57 15 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 5 H -0.27 -11.13 7.11 99.48 0.71 -10.43 15 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 7 C -0.34 -20.20 9.68 84.04 0.81 -19.39 15 8 H 0.07 4.77 7.17 -2.91 -0.02 4.75 15 9 N -0.56 -31.06 5.26 -306.99 -1.61 -32.67 15 10 C 0.49 25.16 7.01 87.66 0.61 25.78 15 11 O -0.64 -38.77 16.06 -3.06 -0.05 -38.82 15 12 C -0.16 -6.00 2.12 -52.93 -0.11 -6.11 15 13 C 0.11 3.47 6.58 86.31 0.57 4.03 15 14 N -0.86 -26.23 9.50 -186.72 -1.77 -28.00 15 15 C -0.14 -4.19 9.76 30.62 0.30 -3.90 15 16 C -0.14 -4.22 9.93 30.62 0.30 -3.91 15 17 H 0.28 14.48 8.31 -92.71 -0.77 13.71 15 18 H 0.39 20.86 7.67 -92.71 -0.71 20.15 15 19 H 0.06 2.10 7.91 -2.39 -0.02 2.08 15 20 H 0.07 1.51 8.09 -2.39 -0.02 1.49 15 21 H 0.35 8.63 9.08 -89.69 -0.81 7.82 15 22 H 0.35 9.36 9.05 -89.69 -0.81 8.55 15 23 H 0.08 2.75 7.83 -2.39 -0.02 2.73 15 24 H 0.13 2.86 8.14 -2.39 -0.02 2.84 15 25 H 0.14 2.85 8.14 -2.38 -0.02 2.84 15 26 H 0.08 2.64 8.14 -2.39 -0.02 2.62 15 Total: -1.00 -72.12 234.86 0.70 -71.42 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -1.12 Total: 36.45 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 2.95 Total: -3.76 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -3.10 Total: -111.87 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.05 Total: -38.82 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -72.12 0.70 -71.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168716966.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.073 kcal (2) G-P(sol) polarization free energy of solvation -72.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds