Wall clock time and date at job start Mon Mar 30 2020 02:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46873 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.48293 * 305.00258 * 11 10 9 13 13 C 1.53089 * 109.47846 * 184.97184 * 11 10 9 14 14 C 1.53180 * 109.16301 * 182.41868 * 13 11 10 15 15 C 1.53187 * 109.04263 * 56.96758 * 14 13 11 16 16 C 1.53091 * 109.16017 * 303.02690 * 15 14 13 17 17 O 1.42902 * 109.47721 * 65.02340 * 11 10 9 18 18 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 20 20 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 21 21 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 22 22 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 23 23 H 1.08999 * 109.53040 * 302.31617 * 13 11 10 24 24 H 1.09002 * 109.52065 * 62.51099 * 13 11 10 25 25 H 1.09002 * 109.53491 * 297.10663 * 14 13 11 26 26 H 1.08997 * 109.62174 * 176.88308 * 14 13 11 27 27 H 1.08991 * 109.52092 * 183.12143 * 15 14 13 28 28 H 1.08996 * 109.51583 * 62.92879 * 15 14 13 29 29 H 1.08998 * 109.47975 * 297.62351 * 16 15 14 30 30 H 1.09003 * 109.47725 * 177.59186 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 1 5.9151 -2.0470 -0.8407 13 6 6.0622 -4.0743 -0.1243 14 6 7.5927 -4.0716 -0.0628 15 6 8.0393 -3.4076 1.2435 16 6 7.4523 -1.9955 1.3156 17 8 6.0282 -2.0676 1.2222 18 1 -0.4850 0.8400 -0.0004 19 1 3.8753 -0.6803 -0.8889 20 1 3.8746 -0.6799 0.8911 21 1 3.6579 -3.1505 0.8908 22 1 3.6587 -3.1502 -0.8892 23 1 5.6660 -4.6743 0.6950 24 1 5.7365 -4.4948 -1.0757 25 1 7.9905 -3.5131 -0.9102 26 1 7.9622 -5.0965 -0.0957 27 1 9.1274 -3.3515 1.2701 28 1 7.6829 -3.9939 2.0904 29 1 7.8409 -1.3978 0.4911 30 1 7.7316 -1.5337 2.2627 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000200507324.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:40 Heat of formation + Delta-G solvation = -75.718832 kcal Electronic energy + Delta-G solvation = -11389.111511 eV Core-core repulsion = 9376.297658 eV Total energy + Delta-G solvation = -2012.813854 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.10512 -34.04738 -33.37878 -32.06965 -29.61748 -25.99203 -23.98040 -22.21679 -20.11648 -19.90881 -16.70828 -16.03824 -15.58808 -14.49706 -14.31699 -14.06684 -13.42246 -12.87548 -12.53872 -12.44094 -12.08959 -11.42946 -11.08471 -11.04993 -10.86392 -10.58879 -10.25204 -9.92042 -9.66835 -9.46523 -9.06896 -8.96276 -8.44791 -5.96353 -3.93238 3.37381 3.44447 3.52357 4.17437 4.54099 4.88650 4.90868 4.98582 5.19132 5.38463 5.41573 5.57964 5.66657 5.80837 5.89087 5.97141 5.99363 6.11223 6.24641 6.35048 6.49202 6.73371 7.00443 7.41106 7.55996 7.73343 7.89949 8.62678 9.08890 9.67171 11.17282 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.067868 B = 0.009642 C = 0.008806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.466096 B = 2903.405116 C = 3178.740170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.263 1.263 6 H -0.289 1.289 7 C -0.518 4.518 8 H 0.070 0.930 9 C -0.012 4.012 10 C -0.095 4.095 11 C 0.088 3.912 12 H 0.051 0.949 13 C -0.151 4.151 14 C -0.122 4.122 15 C -0.155 4.155 16 C 0.058 3.942 17 O -0.370 6.370 18 H 0.262 0.738 19 H 0.007 0.993 20 H 0.025 0.975 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.712 -5.603 0.350 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.187 1.187 6 H -0.215 1.215 7 C -0.556 4.556 8 H 0.089 0.911 9 C -0.049 4.049 10 C -0.133 4.133 11 C 0.030 3.970 12 H 0.069 0.931 13 C -0.189 4.189 14 C -0.160 4.160 15 C -0.193 4.193 16 C -0.019 4.019 17 O -0.289 6.289 18 H 0.071 0.929 19 H 0.025 0.975 20 H 0.043 0.957 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.429 -5.423 0.498 16.362 hybrid contribution 0.586 0.782 -0.245 1.007 sum 16.015 -4.642 0.253 16.676 Atomic orbital electron populations 1.69926 1.06299 1.26759 1.51678 1.25030 0.94716 0.99188 0.94663 0.86776 0.80614 0.83568 0.78394 1.20456 1.18725 1.21482 1.21203 0.89727 0.94388 1.50310 0.91137 1.19537 0.96711 0.92181 0.96512 1.21523 0.89409 1.00687 1.01664 1.22360 0.96743 0.91517 0.86369 0.93073 1.22246 0.95198 0.98732 1.02685 1.21594 0.96376 1.00546 0.97451 1.22190 1.00371 0.98060 0.98686 1.22498 0.82653 0.95245 1.01534 1.88048 1.19356 1.82429 1.39023 0.92871 0.97498 0.95695 0.91954 0.91487 0.91163 0.91068 0.92137 0.91975 0.91514 0.91213 0.93748 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.85 13.96 55.43 0.77 -28.07 16 2 C 0.06 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 22.67 27.47 -169.99 -4.67 18.00 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.52 -15.42 9.66 -34.44 -0.33 -15.76 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.31 3.94 -27.88 -0.11 -0.42 16 10 C -0.10 -1.99 4.86 -26.73 -0.13 -2.12 16 11 C 0.09 1.53 2.64 -26.68 -0.07 1.46 16 12 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 13 C -0.15 -2.11 5.42 -26.59 -0.14 -2.26 16 14 C -0.12 -1.42 6.03 -26.54 -0.16 -1.58 16 15 C -0.16 -1.79 6.14 -26.59 -0.16 -1.95 16 16 C 0.06 0.80 6.84 37.20 0.25 1.05 16 17 O -0.37 -6.80 9.94 -35.23 -0.35 -7.15 16 18 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 19 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 20 H 0.02 0.66 6.88 -51.93 -0.36 0.30 16 21 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 22 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 23 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 243.43 15.07 3.67 3.67 Total: -1.00 -32.01 243.43 -6.52 -38.53 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: -4.99 Total: -5.26 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -0.95 Total: -19.71 kcal Atomic # 7 Polarization: -28.85 SS G_CDS: 0.77 Total: -28.07 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.35 Total: -7.15 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.67 Total: 18.00 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -32.01 -6.52 -38.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000200507324.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.187 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds