Wall clock time and date at job start Mon Mar 30 2020 02:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46873 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.48293 * 305.00258 * 11 10 9 13 13 C 1.53089 * 109.47846 * 184.97184 * 11 10 9 14 14 C 1.53180 * 109.16301 * 182.41868 * 13 11 10 15 15 C 1.53187 * 109.04263 * 56.96758 * 14 13 11 16 16 C 1.53091 * 109.16017 * 303.02690 * 15 14 13 17 17 O 1.42902 * 109.47721 * 65.02340 * 11 10 9 18 18 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 20 20 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 21 21 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 22 22 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 23 23 H 1.08999 * 109.53040 * 302.31617 * 13 11 10 24 24 H 1.09002 * 109.52065 * 62.51099 * 13 11 10 25 25 H 1.09002 * 109.53491 * 297.10663 * 14 13 11 26 26 H 1.08997 * 109.62174 * 176.88308 * 14 13 11 27 27 H 1.08991 * 109.52092 * 183.12143 * 15 14 13 28 28 H 1.08996 * 109.51583 * 62.92879 * 15 14 13 29 29 H 1.08998 * 109.47975 * 297.62351 * 16 15 14 30 30 H 1.09003 * 109.47725 * 177.59186 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 1 5.9151 -2.0470 -0.8407 13 6 6.0622 -4.0743 -0.1243 14 6 7.5927 -4.0716 -0.0628 15 6 8.0393 -3.4076 1.2435 16 6 7.4523 -1.9955 1.3156 17 8 6.0282 -2.0676 1.2222 18 1 -0.4850 0.8400 -0.0004 19 1 3.8753 -0.6803 -0.8889 20 1 3.8746 -0.6799 0.8911 21 1 3.6579 -3.1505 0.8908 22 1 3.6587 -3.1502 -0.8892 23 1 5.6660 -4.6743 0.6950 24 1 5.7365 -4.4948 -1.0757 25 1 7.9905 -3.5131 -0.9102 26 1 7.9622 -5.0965 -0.0957 27 1 9.1274 -3.3515 1.2701 28 1 7.6829 -3.9939 2.0904 29 1 7.8409 -1.3978 0.4911 30 1 7.7316 -1.5337 2.2627 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000200507324.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:40 Heat of formation + Delta-G solvation = -96.494102 kcal Electronic energy + Delta-G solvation = -11390.012395 eV Core-core repulsion = 9376.297658 eV Total energy + Delta-G solvation = -2013.714737 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.31382 -35.91246 -34.48093 -34.03373 -31.21957 -27.66222 -25.22848 -23.72431 -21.84500 -21.07382 -18.93861 -17.33173 -16.79547 -16.31105 -15.55933 -15.34579 -14.87662 -14.70932 -14.34737 -13.62919 -13.49289 -13.14695 -12.89525 -12.23693 -12.16021 -11.90487 -11.77875 -11.62326 -11.47340 -11.29972 -10.96230 -10.76502 -10.22548 -8.30243 -6.33796 1.33359 1.36595 1.50408 2.36340 2.96688 3.05101 3.82486 3.95770 4.00475 4.10549 4.27545 4.45909 4.53788 4.68639 4.69689 4.80304 4.93078 5.00901 5.05983 5.14332 5.19814 5.24841 5.40637 5.49644 5.58522 5.68091 6.27801 6.47032 6.73747 7.30863 8.86644 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.067868 B = 0.009642 C = 0.008806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.466096 B = 2903.405116 C = 3178.740170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.951 3.049 4 H -0.263 1.263 5 H -0.253 1.253 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.032 0.968 9 C -0.006 4.006 10 C -0.092 4.092 11 C 0.091 3.909 12 H 0.056 0.944 13 C -0.147 4.147 14 C -0.119 4.119 15 C -0.151 4.151 16 C 0.047 3.953 17 O -0.405 6.405 18 H 0.267 0.733 19 H 0.015 0.985 20 H 0.015 0.985 21 H 0.047 0.953 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.342 -5.241 0.008 19.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.775 3.225 4 H -0.188 1.188 5 H -0.177 1.177 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.051 0.949 9 C -0.043 4.043 10 C -0.130 4.130 11 C 0.034 3.966 12 H 0.074 0.926 13 C -0.185 4.185 14 C -0.157 4.157 15 C -0.188 4.188 16 C -0.029 4.029 17 O -0.325 6.325 18 H 0.075 0.925 19 H 0.033 0.967 20 H 0.033 0.967 21 H 0.066 0.934 22 H 0.090 0.910 23 H 0.081 0.919 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 18.075 -5.078 0.153 18.776 hybrid contribution -0.291 0.615 -0.111 0.690 sum 17.784 -4.463 0.042 18.336 Atomic orbital electron populations 1.70071 1.08202 1.28161 1.52813 1.26029 0.95660 1.03557 0.94100 0.85635 0.79344 0.78232 0.79328 1.18759 1.17664 1.20665 1.21562 0.92232 0.93189 1.50263 0.94918 1.19439 0.93606 0.95137 0.96142 1.21417 0.92643 0.97652 1.01259 1.22206 0.93935 0.93992 0.86471 0.92619 1.22191 0.97269 0.96013 1.03030 1.21611 0.94150 1.02077 0.97836 1.22167 1.01916 0.96294 0.98459 1.22797 0.80369 0.97169 1.02559 1.87982 1.22340 1.82915 1.39247 0.92463 0.96670 0.96675 0.93417 0.90972 0.91853 0.89970 0.91230 0.89848 0.88702 0.91715 0.92901 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.75 13.96 21.45 0.30 -61.45 16 2 C 0.00 0.18 5.47 84.65 0.46 0.65 16 3 Si 0.95 46.59 27.47 68.60 1.88 48.48 16 4 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.25 -11.89 6.54 99.48 0.65 -11.23 16 6 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 7 C -0.53 -32.62 9.66 25.60 0.25 -32.38 16 8 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 9 C -0.01 -0.30 3.94 29.85 0.12 -0.18 16 10 C -0.09 -3.87 4.86 30.60 0.15 -3.72 16 11 C 0.09 3.07 2.64 30.63 0.08 3.15 16 12 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 13 C -0.15 -3.81 5.42 30.68 0.17 -3.64 16 14 C -0.12 -2.36 6.03 30.72 0.19 -2.17 16 15 C -0.15 -2.97 6.14 30.69 0.19 -2.78 16 16 C 0.05 1.18 6.84 72.01 0.49 1.68 16 17 O -0.40 -14.37 9.94 -148.98 -1.48 -15.86 16 18 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 19 H 0.01 0.73 7.57 -2.39 -0.02 0.72 16 20 H 0.01 0.78 6.88 -2.39 -0.02 0.77 16 21 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 22 H 0.07 2.88 8.14 -2.39 -0.02 2.87 16 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -69.51 243.43 3.81 -65.70 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: 1.02 Total: 2.52 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 2.09 Total: -39.39 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: 0.30 Total: -61.45 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -1.48 Total: -15.86 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.88 Total: 48.48 kcal Total: -69.51 3.81 -65.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000200507324.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.796 kcal (2) G-P(sol) polarization free energy of solvation -69.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds