Wall clock time and date at job start Mon Mar 30 2020 02:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00207 * 2 1 4 4 H 1.48495 * 109.47362 * 240.00068 * 3 2 1 5 5 H 1.48502 * 109.46986 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47167 * 120.00057 * 3 2 1 7 7 C 1.37883 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99819 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46627 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46950 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.48933 * 54.96906 * 11 10 9 13 13 C 1.53095 * 109.48191 * 175.00158 * 11 10 9 14 14 C 1.53176 * 109.16286 * 177.59206 * 13 11 10 15 15 C 1.53178 * 109.03609 * 303.01594 * 14 13 11 16 16 C 1.53095 * 109.16080 * 56.98198 * 15 14 13 17 17 O 1.42903 * 109.47750 * 294.94348 * 11 10 9 18 18 H 0.96997 * 119.99972 * 0.02562 * 1 2 3 19 19 H 1.08996 * 109.47171 * 60.00561 * 9 7 2 20 20 H 1.08995 * 109.47001 * 300.00147 * 9 7 2 21 21 H 1.09000 * 109.47392 * 60.00163 * 10 9 7 22 22 H 1.09003 * 109.47311 * 299.99468 * 10 9 7 23 23 H 1.09001 * 109.52293 * 57.67958 * 13 11 10 24 24 H 1.09007 * 109.52035 * 297.49726 * 13 11 10 25 25 H 1.08994 * 109.54424 * 62.88738 * 14 13 11 26 26 H 1.09001 * 109.53903 * 183.06307 * 14 13 11 27 27 H 1.08998 * 109.52143 * 176.88477 * 15 14 13 28 28 H 1.08997 * 109.52245 * 297.01511 * 15 14 13 29 29 H 1.08998 * 109.47951 * 62.37722 * 16 15 14 30 30 H 1.09003 * 109.48042 * 182.39637 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 1 0.7878 -5.0069 -0.8428 13 6 2.4701 -6.1482 -0.1269 14 6 1.7024 -7.4723 -0.0663 15 6 0.9043 -7.5278 1.2400 16 6 -0.0251 -6.3134 1.3129 17 8 0.7494 -5.1160 1.2201 18 1 -0.4850 0.8400 -0.0004 19 1 0.6240 -2.5568 -0.8903 20 1 0.6246 -2.5571 0.8896 21 1 2.8718 -3.6044 0.8894 22 1 2.8718 -3.6044 -0.8906 23 1 3.1878 -6.1053 0.6923 24 1 2.9972 -6.0760 -1.0783 25 1 1.0199 -7.5372 -0.9136 26 1 2.4064 -8.3038 -0.1006 27 1 0.3116 -8.4421 1.2662 28 1 1.5904 -7.5139 2.0868 29 1 -0.7372 -6.3506 0.4885 30 1 -0.5647 -6.3250 2.2600 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000200507357.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:43 Heat of formation + Delta-G solvation = -78.887945 kcal Electronic energy + Delta-G solvation = -11333.975176 eV Core-core repulsion = 9321.023899 eV Total energy + Delta-G solvation = -2012.951277 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.98329 -33.93715 -33.27653 -32.01505 -29.21527 -25.69282 -23.93033 -22.34451 -20.06733 -19.93553 -16.27823 -15.90981 -15.43796 -14.49363 -14.30309 -14.16507 -13.25676 -12.62998 -12.49395 -12.28445 -11.77019 -11.24829 -10.98182 -10.90713 -10.82296 -10.49024 -10.35589 -10.06521 -9.65291 -9.32467 -8.98975 -8.77055 -8.24230 -5.90141 -3.92191 3.38835 3.42693 3.45449 4.30028 4.53087 4.97103 4.99782 5.06878 5.29407 5.45065 5.52087 5.67489 5.77037 5.90758 6.00569 6.06814 6.07857 6.19398 6.36758 6.44377 6.63376 6.91622 7.22100 7.76752 7.82329 8.02219 8.14358 8.53315 9.15553 9.70687 11.21199 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.087499 B = 0.008304 C = 0.007851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.928627 B = 3371.184043 C = 3565.542816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.024 3.976 10 C -0.104 4.104 11 C 0.090 3.910 12 H 0.051 0.949 13 C -0.151 4.151 14 C -0.122 4.122 15 C -0.155 4.155 16 C 0.058 3.942 17 O -0.367 6.367 18 H 0.260 0.740 19 H 0.011 0.989 20 H 0.025 0.975 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.992 -13.168 0.308 13.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.141 4.141 11 C 0.033 3.967 12 H 0.069 0.931 13 C -0.189 4.189 14 C -0.159 4.159 15 C -0.193 4.193 16 C -0.019 4.019 17 O -0.286 6.286 18 H 0.069 0.931 19 H 0.030 0.970 20 H 0.043 0.957 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.846 -12.903 0.451 13.042 hybrid contribution 0.411 0.653 -0.221 0.803 sum 2.257 -12.250 0.230 12.458 Atomic orbital electron populations 1.69968 1.06028 1.26504 1.51006 1.25024 0.94831 0.99138 0.95503 0.86679 0.79582 0.83302 0.78538 1.20327 1.21332 1.20288 1.21269 0.92938 0.91301 1.50376 0.92859 1.19052 0.93938 0.90811 0.97519 1.21695 0.98870 0.92761 1.00792 1.22321 0.92381 0.95564 0.86438 0.93072 1.22265 0.99140 0.95042 1.02454 1.21589 0.99055 0.97786 0.97518 1.22190 0.99631 0.98880 0.98582 1.22486 0.92915 0.84938 1.01562 1.88062 1.62509 1.39119 1.38932 0.93068 0.97018 0.95651 0.92593 0.92122 0.91344 0.91234 0.92119 0.92111 0.91580 0.91323 0.93706 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.29 55.43 0.74 -27.17 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -15.38 9.11 -34.44 -0.31 -15.70 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.65 4.87 -27.88 -0.14 0.52 16 10 C -0.10 -2.27 4.86 -26.73 -0.13 -2.40 16 11 C 0.09 1.69 2.64 -26.68 -0.07 1.62 16 12 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 13 C -0.15 -2.24 5.42 -26.59 -0.14 -2.38 16 14 C -0.12 -1.51 6.03 -26.55 -0.16 -1.67 16 15 C -0.16 -1.90 6.14 -26.59 -0.16 -2.07 16 16 C 0.06 0.86 6.84 37.21 0.25 1.12 16 17 O -0.37 -7.23 9.94 -35.23 -0.35 -7.58 16 18 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 19 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 20 H 0.03 0.75 7.82 -51.93 -0.41 0.35 16 21 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 22 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 247.03 15.07 3.72 3.72 Total: -1.00 -31.66 247.03 -6.89 -38.55 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -5.02 Total: -5.39 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -0.96 Total: -19.40 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 0.74 Total: -27.17 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.35 Total: -7.58 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.66 -6.89 -38.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000200507357.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.333 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds