Wall clock time and date at job start Mon Mar 30 2020 02:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00207 * 2 1 4 4 H 1.48495 * 109.47362 * 240.00068 * 3 2 1 5 5 H 1.48502 * 109.46986 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47167 * 120.00057 * 3 2 1 7 7 C 1.37883 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99819 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46627 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46950 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.48933 * 54.96906 * 11 10 9 13 13 C 1.53095 * 109.48191 * 175.00158 * 11 10 9 14 14 C 1.53176 * 109.16286 * 177.59206 * 13 11 10 15 15 C 1.53178 * 109.03609 * 303.01594 * 14 13 11 16 16 C 1.53095 * 109.16080 * 56.98198 * 15 14 13 17 17 O 1.42903 * 109.47750 * 294.94348 * 11 10 9 18 18 H 0.96997 * 119.99972 * 0.02562 * 1 2 3 19 19 H 1.08996 * 109.47171 * 60.00561 * 9 7 2 20 20 H 1.08995 * 109.47001 * 300.00147 * 9 7 2 21 21 H 1.09000 * 109.47392 * 60.00163 * 10 9 7 22 22 H 1.09003 * 109.47311 * 299.99468 * 10 9 7 23 23 H 1.09001 * 109.52293 * 57.67958 * 13 11 10 24 24 H 1.09007 * 109.52035 * 297.49726 * 13 11 10 25 25 H 1.08994 * 109.54424 * 62.88738 * 14 13 11 26 26 H 1.09001 * 109.53903 * 183.06307 * 14 13 11 27 27 H 1.08998 * 109.52143 * 176.88477 * 15 14 13 28 28 H 1.08997 * 109.52245 * 297.01511 * 15 14 13 29 29 H 1.08998 * 109.47951 * 62.37722 * 16 15 14 30 30 H 1.09003 * 109.48042 * 182.39637 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 1 0.7878 -5.0069 -0.8428 13 6 2.4701 -6.1482 -0.1269 14 6 1.7024 -7.4723 -0.0663 15 6 0.9043 -7.5278 1.2400 16 6 -0.0251 -6.3134 1.3129 17 8 0.7494 -5.1160 1.2201 18 1 -0.4850 0.8400 -0.0004 19 1 0.6240 -2.5568 -0.8903 20 1 0.6246 -2.5571 0.8896 21 1 2.8718 -3.6044 0.8894 22 1 2.8718 -3.6044 -0.8906 23 1 3.1878 -6.1053 0.6923 24 1 2.9972 -6.0760 -1.0783 25 1 1.0199 -7.5372 -0.9136 26 1 2.4064 -8.3038 -0.1006 27 1 0.3116 -8.4421 1.2662 28 1 1.5904 -7.5139 2.0868 29 1 -0.7372 -6.3506 0.4885 30 1 -0.5647 -6.3250 2.2600 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000200507357.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:42 Heat of formation + Delta-G solvation = -98.864470 kcal Electronic energy + Delta-G solvation = -11334.841423 eV Core-core repulsion = 9321.023899 eV Total energy + Delta-G solvation = -2013.817524 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.30243 -35.90495 -34.47802 -33.91533 -30.89455 -27.49117 -25.33376 -23.93285 -21.91174 -21.09244 -18.49191 -17.32575 -16.75339 -16.53134 -15.52097 -15.37479 -14.63505 -14.46176 -14.38704 -13.52622 -13.42145 -12.98954 -12.80666 -12.47755 -12.14727 -12.05634 -11.77767 -11.63786 -11.42398 -11.27147 -10.90105 -10.54480 -10.20063 -8.18454 -6.30788 1.39292 1.43737 1.51552 2.41713 2.98409 3.13734 3.85783 3.95605 3.99914 4.10690 4.27739 4.48897 4.55682 4.70339 4.75532 4.83477 4.94976 5.03142 5.10827 5.14618 5.23485 5.30372 5.42564 5.51640 5.75282 5.87640 6.25306 6.48403 6.87032 7.38162 8.93495 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.087499 B = 0.008304 C = 0.007851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.928627 B = 3371.184043 C = 3565.542816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.095 4.095 11 C 0.091 3.909 12 H 0.043 0.957 13 C -0.145 4.145 14 C -0.120 4.120 15 C -0.149 4.149 16 C 0.047 3.953 17 O -0.406 6.406 18 H 0.263 0.737 19 H -0.014 1.014 20 H -0.012 1.012 21 H 0.051 0.949 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.273 -14.010 0.099 14.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.132 4.132 11 C 0.034 3.966 12 H 0.061 0.939 13 C -0.182 4.182 14 C -0.157 4.157 15 C -0.186 4.186 16 C -0.030 4.030 17 O -0.326 6.326 18 H 0.072 0.928 19 H 0.004 0.996 20 H 0.006 0.994 21 H 0.070 0.930 22 H 0.093 0.907 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.135 -13.770 0.240 14.124 hybrid contribution -0.064 0.902 -0.133 0.914 sum 3.071 -12.868 0.107 13.229 Atomic orbital electron populations 1.70120 1.07971 1.27814 1.51631 1.26065 0.95821 1.03602 0.94648 0.85445 0.78232 0.77750 0.79275 1.18826 1.20708 1.19211 1.21738 0.93611 0.92505 1.50701 0.92008 1.18901 0.94318 0.93031 0.94409 1.21536 0.97837 0.92698 1.01167 1.22205 0.92920 0.95445 0.86050 0.93885 1.22186 0.98247 0.94626 1.03166 1.21616 0.99451 0.96961 0.97689 1.22154 0.99358 0.98513 0.98596 1.22789 0.93321 0.84575 1.02291 1.87993 1.63449 1.41940 1.39227 0.92790 0.99587 0.99364 0.93022 0.90731 0.91449 0.89828 0.91574 0.89449 0.88644 0.91421 0.93487 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.60 13.29 21.45 0.28 -59.31 16 2 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 3 Si 0.97 45.73 29.54 68.60 2.03 47.75 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.55 -32.92 9.11 25.60 0.23 -32.69 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.74 4.87 29.85 0.15 1.89 16 10 C -0.09 -4.22 4.86 30.59 0.15 -4.07 16 11 C 0.09 3.41 2.64 30.63 0.08 3.49 16 12 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 13 C -0.14 -3.99 5.42 30.69 0.17 -3.83 16 14 C -0.12 -2.59 6.03 30.71 0.19 -2.41 16 15 C -0.15 -3.25 6.14 30.69 0.19 -3.07 16 16 C 0.05 1.34 6.84 72.01 0.49 1.84 16 17 O -0.41 -16.22 9.94 -148.98 -1.48 -17.70 16 18 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 19 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 20 H -0.01 -0.77 7.82 -2.39 -0.02 -0.79 16 21 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 22 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -69.37 247.03 4.01 -65.36 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: 1.08 Total: 2.52 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 2.10 Total: -38.63 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 0.28 Total: -59.31 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -1.48 Total: -17.70 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -69.37 4.01 -65.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000200507357.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.500 kcal (2) G-P(sol) polarization free energy of solvation -69.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds