Wall clock time and date at job start Mon Mar 30 2020 01:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99852 * 2 1 4 4 O 1.20831 * 120.00038 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00130 * 180.02562 * 3 2 1 6 6 C 1.52999 * 115.54385 * 293.67977 * 5 3 2 7 7 C 1.50701 * 109.47527 * 294.67616 * 6 5 3 8 8 H 1.07996 * 119.99496 * 4.18999 * 7 6 5 9 9 C 1.37870 * 120.00232 * 184.19474 * 7 6 5 10 10 N 1.31514 * 120.00036 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00005 * 180.27770 * 9 7 6 12 12 H 1.48504 * 109.47184 * 179.72132 * 11 9 7 13 13 H 1.48504 * 109.47145 * 299.72103 * 11 9 7 14 14 H 1.48499 * 109.47530 * 59.71926 * 11 9 7 15 15 C 1.52997 * 117.50040 * 79.34575 * 5 3 2 16 16 C 1.52991 * 117.50161 * 148.01087 * 5 3 2 17 17 H 1.08993 * 109.46990 * 299.99946 * 1 2 3 18 18 H 1.08993 * 109.47161 * 60.00290 * 1 2 3 19 19 H 1.09006 * 109.47006 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.46843 * 174.67737 * 6 5 3 21 21 H 1.08997 * 109.47461 * 54.67874 * 6 5 3 22 22 H 0.96998 * 119.99783 * 180.02562 * 10 9 7 23 23 H 1.08994 * 117.49902 * 215.00291 * 15 5 3 24 24 H 1.09003 * 117.49986 * 0.02768 * 15 5 3 25 25 H 1.09003 * 117.49945 * 359.97419 * 16 5 3 26 26 H 1.08999 * 117.49990 * 144.97094 * 16 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.2547 0.7556 1.2633 7 6 3.8901 1.6350 2.4315 8 1 3.1804 2.4386 2.3015 9 6 4.4624 1.4136 3.6661 10 7 5.3263 0.4347 3.8244 11 14 4.0045 2.4988 5.1159 12 1 4.7474 2.0530 6.3220 13 1 4.3576 3.9085 4.8101 14 1 2.5447 2.3978 5.3684 15 6 4.2844 1.0617 -1.3346 16 6 4.2113 2.4615 -0.7195 17 1 -0.3633 0.5138 0.8899 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 5.3353 0.7705 1.1206 21 1 3.9285 -0.2654 1.4613 22 1 5.7287 0.2788 4.6931 23 1 5.2473 0.5515 -1.3119 24 1 3.6684 0.8647 -2.2120 25 1 3.5471 3.1849 -1.1925 26 1 5.1258 2.8724 -0.2919 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213686571.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:06 Heat of formation + Delta-G solvation = -90.698607 kcal Electronic energy + Delta-G solvation = -11250.049549 eV Core-core repulsion = 9100.753029 eV Total energy + Delta-G solvation = -2149.296520 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.57803 -38.47279 -37.17097 -34.89337 -30.47621 -28.88149 -25.81833 -24.21514 -23.30386 -20.71188 -18.68398 -18.10828 -17.54849 -17.25553 -16.48345 -15.56246 -14.94644 -14.41857 -14.07856 -13.65926 -13.58247 -13.10155 -12.72153 -12.67805 -12.40847 -12.22174 -11.81896 -11.75107 -11.26937 -11.18328 -10.68682 -10.55398 -8.23133 -6.33116 1.20061 1.36962 1.38866 1.47438 1.83592 2.37466 2.86307 3.10181 3.82633 3.88680 4.07654 4.30218 4.31374 4.37219 4.65889 4.72247 4.99100 5.03502 5.25492 5.32254 5.39503 5.53751 5.74073 6.16940 6.75492 6.83178 7.35101 8.87428 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.038627 B = 0.013781 C = 0.012086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.703357 B = 2031.347207 C = 2316.131309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.514 3.486 4 O -0.542 6.542 5 C -0.149 4.149 6 C 0.073 3.927 7 C -0.539 4.539 8 H 0.044 0.956 9 C 0.011 3.989 10 N -0.924 5.924 11 Si 0.955 3.045 12 H -0.275 1.275 13 H -0.268 1.268 14 H -0.276 1.276 15 C -0.135 4.135 16 C -0.139 4.139 17 H 0.051 0.949 18 H 0.070 0.930 19 H 0.134 0.866 20 H 0.024 0.976 21 H 0.003 0.997 22 H 0.266 0.734 23 H 0.117 0.883 24 H 0.115 0.885 25 H 0.101 0.899 26 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.947 -0.484 -8.226 9.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.359 3.641 4 O -0.432 6.432 5 C -0.150 4.150 6 C 0.036 3.964 7 C -0.577 4.577 8 H 0.062 0.938 9 C -0.188 4.188 10 N -0.563 5.563 11 Si 0.780 3.220 12 H -0.200 1.200 13 H -0.193 1.193 14 H -0.201 1.201 15 C -0.172 4.172 16 C -0.176 4.176 17 H 0.070 0.930 18 H 0.089 0.911 19 H 0.153 0.847 20 H 0.042 0.958 21 H 0.021 0.979 22 H 0.075 0.925 23 H 0.135 0.865 24 H 0.133 0.867 25 H 0.119 0.881 26 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.074 -0.299 -8.098 9.561 hybrid contribution -0.419 0.497 1.105 1.282 sum -5.492 0.198 -6.993 8.894 Atomic orbital electron populations 1.23563 0.75063 1.05729 1.02326 1.86522 1.24904 1.32896 1.83560 1.22820 0.90700 0.80891 0.69691 1.90533 1.67576 1.37406 1.47698 1.21222 0.86671 1.08880 0.98264 1.18456 0.94654 0.94732 0.88531 1.21399 1.25374 1.15523 0.95374 0.93753 1.25775 0.94851 0.96694 1.01476 1.70033 1.29766 1.31489 1.25044 0.85657 0.78332 0.79419 0.78621 1.19974 1.19293 1.20122 1.23265 1.02285 0.98569 0.93067 1.23015 1.02197 0.91340 1.01058 0.93031 0.91099 0.84748 0.95752 0.97885 0.92459 0.86466 0.86713 0.88110 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 15 2 O -0.36 -14.16 10.57 -51.38 -0.54 -14.70 15 3 C 0.51 22.49 6.83 71.24 0.49 22.97 15 4 O -0.54 -25.30 16.47 21.95 0.36 -24.93 15 5 C -0.15 -6.42 1.95 -52.93 -0.10 -6.53 15 6 C 0.07 3.85 4.85 29.85 0.14 4.00 15 7 C -0.54 -31.32 8.82 25.60 0.23 -31.09 15 8 H 0.04 2.64 7.68 -2.91 -0.02 2.62 15 9 C 0.01 0.63 5.46 84.65 0.46 1.09 15 10 N -0.92 -55.25 13.29 21.44 0.28 -54.97 15 11 Si 0.95 45.27 29.54 68.60 2.03 47.30 15 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 15 13 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 14 H -0.28 -12.93 7.11 99.48 0.71 -12.23 15 15 C -0.14 -4.32 9.93 30.62 0.30 -4.02 15 16 C -0.14 -5.05 9.78 30.62 0.30 -4.75 15 17 H 0.05 1.55 8.13 -2.39 -0.02 1.53 15 18 H 0.07 1.79 8.13 -2.39 -0.02 1.77 15 19 H 0.13 2.70 8.14 -2.38 -0.02 2.68 15 20 H 0.02 1.31 8.09 -2.38 -0.02 1.29 15 21 H 0.00 0.16 8.14 -2.39 -0.02 0.14 15 22 H 0.27 14.97 8.31 -92.71 -0.77 14.20 15 23 H 0.12 3.43 8.14 -2.39 -0.02 3.41 15 24 H 0.11 3.05 8.14 -2.39 -0.02 3.03 15 25 H 0.10 3.45 8.01 -2.39 -0.02 3.43 15 26 H 0.10 3.81 8.14 -2.39 -0.02 3.79 15 Total: -1.00 -67.64 238.42 6.30 -61.34 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 1.15 Total: 2.35 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 3.02 Total: -16.39 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.28 Total: -54.97 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.18 Total: -39.63 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -67.64 6.30 -61.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213686571.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.354 kcal (2) G-P(sol) polarization free energy of solvation -67.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds