Wall clock time and date at job start Mon Mar 30 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99956 * 2 1 4 4 H 1.48496 * 109.47407 * 270.00241 * 3 2 1 5 5 H 1.48507 * 109.47114 * 29.99804 * 3 2 1 6 6 H 1.48500 * 109.47263 * 149.99810 * 3 2 1 7 7 C 1.37879 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99974 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99882 * 180.02562 * 7 2 1 10 10 H 1.09004 * 110.28711 * 57.87233 * 9 7 2 11 11 C 1.54374 * 110.41307 * 295.68577 * 9 7 2 12 12 N 1.48551 * 104.59541 * 264.91516 * 11 9 7 13 13 C 1.48561 * 104.22369 * 320.51345 * 12 11 9 14 14 C 1.54259 * 110.32417 * 179.97438 * 9 7 2 15 15 H 1.09002 * 110.32223 * 0.10315 * 14 9 7 16 16 C 1.50701 * 110.32478 * 237.99591 * 14 9 7 17 17 N 1.34782 * 119.99586 * 181.42705 * 16 14 9 18 18 O 1.21277 * 119.99962 * 1.42750 * 16 14 9 19 19 H 0.96995 * 120.00667 * 0.02562 * 1 2 3 20 20 H 1.09004 * 110.41045 * 23.69176 * 11 9 7 21 21 H 1.09000 * 110.41558 * 146.13264 * 11 9 7 22 22 H 1.00898 * 111.00410 * 200.95612 * 12 11 9 23 23 H 1.09005 * 110.41198 * 280.70728 * 13 12 11 24 24 H 1.08998 * 110.41368 * 158.26250 * 13 12 11 25 25 H 0.96995 * 120.00241 * 0.02562 * 17 16 14 26 26 H 0.97008 * 119.99432 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8891 -0.6508 0.8664 11 6 4.0504 -0.5660 -1.3032 12 7 4.3008 -1.7230 -2.2006 13 6 4.8649 -2.7648 -1.3043 14 6 4.0474 -2.6405 -0.0001 15 1 3.2204 -3.3506 -0.0024 16 6 4.9311 -2.8715 1.1986 17 7 5.5281 -4.0669 1.3753 18 8 5.1049 -1.9818 2.0042 19 1 -0.4851 0.8399 -0.0004 20 1 3.3064 0.1000 -1.7402 21 1 4.9779 -0.0268 -1.1102 22 1 4.9549 -1.4804 -2.9295 23 1 5.9199 -2.5698 -1.1114 24 1 4.7342 -3.7544 -1.7421 25 1 5.3893 -4.7783 0.7308 26 1 6.0967 -4.2156 2.1471 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215379787.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:20 Heat of formation + Delta-G solvation = -35.741045 kcal Electronic energy + Delta-G solvation = -11525.697777 eV Core-core repulsion = 9411.077146 eV Total energy + Delta-G solvation = -2114.620630 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.49099 -36.90513 -33.35957 -32.49476 -29.96024 -28.62945 -24.23905 -22.12107 -20.72504 -18.83741 -17.32611 -16.74231 -15.95873 -15.45871 -14.66961 -14.19815 -13.49189 -13.03935 -12.83654 -12.32976 -11.82274 -11.48227 -10.85163 -10.54427 -10.31972 -9.83047 -9.64419 -9.38252 -9.30774 -9.08242 -8.47052 -7.94343 -5.98767 -3.95519 3.11625 3.33047 3.43878 3.49983 3.92626 4.49825 4.89230 5.23121 5.33667 5.50922 5.64440 5.80011 6.07458 6.26431 6.46019 6.64050 6.97916 7.04187 7.14420 7.62581 7.67060 7.80069 7.91521 8.57588 8.69446 9.03094 9.63076 11.14570 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.045628 B = 0.015673 C = 0.014394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.515391 B = 1786.139992 C = 1944.787509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.261 1.261 7 C -0.495 4.495 8 H 0.074 0.926 9 C 0.019 3.981 10 H 0.062 0.938 11 C 0.027 3.973 12 N -0.650 5.650 13 C 0.050 3.950 14 C -0.103 4.103 15 H 0.107 0.893 16 C 0.523 3.477 17 N -0.864 5.864 18 O -0.538 6.538 19 H 0.263 0.737 20 H 0.081 0.919 21 H 0.015 0.985 22 H 0.322 0.678 23 H 0.030 0.970 24 H 0.077 0.923 25 H 0.398 0.602 26 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.015 -6.409 -1.894 12.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.700 3.300 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.185 1.185 7 C -0.533 4.533 8 H 0.092 0.908 9 C -0.001 4.001 10 H 0.080 0.920 11 C -0.102 4.102 12 N -0.277 5.277 13 C -0.080 4.080 14 C -0.125 4.125 15 H 0.125 0.875 16 C 0.309 3.691 17 N -0.427 5.427 18 O -0.413 6.413 19 H 0.072 0.928 20 H 0.099 0.901 21 H 0.033 0.967 22 H 0.136 0.864 23 H 0.048 0.952 24 H 0.095 0.905 25 H 0.226 0.774 26 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 10.129 -5.837 -1.527 11.790 hybrid contribution 1.460 0.772 0.109 1.655 sum 11.589 -5.065 -1.418 12.727 Atomic orbital electron populations 1.69884 1.06167 1.26795 1.51244 1.24943 0.94683 0.98869 0.94630 0.87014 0.80810 0.83978 0.78174 1.20344 1.21783 1.18533 1.20919 0.87854 0.94456 1.50052 0.90799 1.20005 0.97464 0.89175 0.93459 0.92036 1.23596 0.97766 0.92931 0.95915 1.63676 1.44396 1.08746 1.10890 1.22776 0.95170 0.97219 0.92813 1.22153 0.96838 1.03373 0.90151 0.87518 1.20969 0.79171 0.81411 0.87591 1.43964 1.53269 1.15458 1.30046 1.90683 1.61725 1.43180 1.45748 0.92755 0.90070 0.96717 0.86446 0.95175 0.90489 0.77397 0.77744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.42 15 2 C 0.07 2.07 5.37 -17.82 -0.10 1.97 15 3 Si 0.87 22.42 24.82 -169.99 -4.22 18.20 15 4 H -0.28 -6.84 6.95 56.52 0.39 -6.44 15 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 15 6 H -0.26 -6.63 6.49 56.52 0.37 -6.26 15 7 C -0.49 -14.24 9.09 -34.44 -0.31 -14.55 15 8 H 0.07 2.27 7.60 -52.49 -0.40 1.87 15 9 C 0.02 0.46 2.08 -90.39 -0.19 0.27 15 10 H 0.06 1.66 5.40 -51.93 -0.28 1.38 15 11 C 0.03 0.60 5.65 -2.19 -0.01 0.59 15 12 N -0.65 -12.27 7.62 -109.64 -0.84 -13.11 15 13 C 0.05 0.82 6.97 -2.16 -0.02 0.81 15 14 C -0.10 -2.04 3.08 -90.36 -0.28 -2.32 15 15 H 0.11 2.12 7.42 -51.93 -0.39 1.73 15 16 C 0.52 9.70 7.29 -10.98 -0.08 9.62 15 17 N -0.86 -10.70 8.83 31.22 0.28 -10.43 15 18 O -0.54 -12.42 16.09 5.56 0.09 -12.33 15 19 H 0.26 7.72 8.31 -40.82 -0.34 7.38 15 20 H 0.08 1.97 5.27 -51.93 -0.27 1.70 15 21 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 15 22 H 0.32 5.02 8.92 -39.29 -0.35 4.67 15 23 H 0.03 0.45 7.86 -51.93 -0.41 0.04 15 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 25 H 0.40 3.64 8.83 -40.82 -0.36 3.28 15 26 H 0.39 4.21 8.93 -40.82 -0.36 3.84 15 LS Contribution 216.23 15.07 3.26 3.26 Total: -1.00 -34.31 216.23 -4.49 -38.80 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -2.85 Total: 6.63 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -0.98 Total: -3.61 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.21 Total: -50.96 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.22 Total: 18.20 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -34.31 -4.49 -38.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215379787.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.060 kcal (2) G-P(sol) polarization free energy of solvation -34.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds