Wall clock time and date at job start Mon Mar 30 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99956 * 2 1 4 4 H 1.48496 * 109.47407 * 270.00241 * 3 2 1 5 5 H 1.48507 * 109.47114 * 29.99804 * 3 2 1 6 6 H 1.48500 * 109.47263 * 149.99810 * 3 2 1 7 7 C 1.37879 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99974 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99882 * 180.02562 * 7 2 1 10 10 H 1.09004 * 110.28711 * 57.87233 * 9 7 2 11 11 C 1.54374 * 110.41307 * 295.68577 * 9 7 2 12 12 N 1.48551 * 104.59541 * 264.91516 * 11 9 7 13 13 C 1.48561 * 104.22369 * 320.51345 * 12 11 9 14 14 C 1.54259 * 110.32417 * 179.97438 * 9 7 2 15 15 H 1.09002 * 110.32223 * 0.10315 * 14 9 7 16 16 C 1.50701 * 110.32478 * 237.99591 * 14 9 7 17 17 N 1.34782 * 119.99586 * 181.42705 * 16 14 9 18 18 O 1.21277 * 119.99962 * 1.42750 * 16 14 9 19 19 H 0.96995 * 120.00667 * 0.02562 * 1 2 3 20 20 H 1.09004 * 110.41045 * 23.69176 * 11 9 7 21 21 H 1.09000 * 110.41558 * 146.13264 * 11 9 7 22 22 H 1.00898 * 111.00410 * 200.95612 * 12 11 9 23 23 H 1.09005 * 110.41198 * 280.70728 * 13 12 11 24 24 H 1.08998 * 110.41368 * 158.26250 * 13 12 11 25 25 H 0.96995 * 120.00241 * 0.02562 * 17 16 14 26 26 H 0.97008 * 119.99432 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8891 -0.6508 0.8664 11 6 4.0504 -0.5660 -1.3032 12 7 4.3008 -1.7230 -2.2006 13 6 4.8649 -2.7648 -1.3043 14 6 4.0474 -2.6405 -0.0001 15 1 3.2204 -3.3506 -0.0024 16 6 4.9311 -2.8715 1.1986 17 7 5.5281 -4.0669 1.3753 18 8 5.1049 -1.9818 2.0042 19 1 -0.4851 0.8399 -0.0004 20 1 3.3064 0.1000 -1.7402 21 1 4.9779 -0.0268 -1.1102 22 1 4.9549 -1.4804 -2.9295 23 1 5.9199 -2.5698 -1.1114 24 1 4.7342 -3.7544 -1.7421 25 1 5.3893 -4.7783 0.7308 26 1 6.0967 -4.2156 2.1471 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215379787.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:20 Heat of formation + Delta-G solvation = -67.453233 kcal Electronic energy + Delta-G solvation = -11527.072920 eV Core-core repulsion = 9411.077146 eV Total energy + Delta-G solvation = -2115.995774 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.01144 -38.48824 -34.84950 -34.49263 -31.72166 -30.27751 -26.23404 -23.59381 -22.42238 -20.41652 -19.07487 -18.33840 -17.53531 -17.13031 -16.26455 -15.88887 -15.18670 -14.83808 -14.43104 -14.22888 -13.53590 -13.25276 -12.62316 -12.38173 -12.13775 -11.69626 -11.59777 -11.15924 -10.90284 -10.70846 -10.62676 -9.41450 -8.27127 -6.27482 1.28402 1.34978 1.45741 1.67024 2.34604 2.64876 3.07373 3.50975 3.78218 4.03125 4.24570 4.36969 4.49962 4.77941 4.81760 5.00481 5.26226 5.37501 5.66650 5.84115 5.97918 6.30717 6.52287 6.57994 6.76014 7.34787 7.42244 8.89650 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.045628 B = 0.015673 C = 0.014394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.515391 B = 1786.139992 C = 1944.787509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.011 3.989 3 Si 0.934 3.066 4 H -0.258 1.258 5 H -0.291 1.291 6 H -0.257 1.257 7 C -0.496 4.496 8 H 0.038 0.962 9 C 0.009 3.991 10 H 0.036 0.964 11 C 0.032 3.968 12 N -0.661 5.661 13 C 0.059 3.941 14 C -0.106 4.106 15 H 0.100 0.900 16 C 0.525 3.475 17 N -0.829 5.829 18 O -0.591 6.591 19 H 0.264 0.736 20 H 0.058 0.942 21 H 0.031 0.969 22 H 0.344 0.656 23 H 0.053 0.947 24 H 0.115 0.885 25 H 0.419 0.581 26 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.363 -7.204 -2.796 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.185 4.185 3 Si 0.759 3.241 4 H -0.182 1.182 5 H -0.217 1.217 6 H -0.182 1.182 7 C -0.534 4.534 8 H 0.056 0.944 9 C -0.011 4.011 10 H 0.054 0.946 11 C -0.097 4.097 12 N -0.291 5.291 13 C -0.070 4.070 14 C -0.127 4.127 15 H 0.118 0.882 16 C 0.310 3.690 17 N -0.393 5.393 18 O -0.471 6.471 19 H 0.073 0.927 20 H 0.076 0.924 21 H 0.050 0.950 22 H 0.161 0.839 23 H 0.072 0.928 24 H 0.133 0.867 25 H 0.250 0.750 26 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 12.520 -6.709 -2.462 14.416 hybrid contribution 0.714 0.862 0.403 1.190 sum 13.234 -5.847 -2.059 14.614 Atomic orbital electron populations 1.70027 1.07888 1.27787 1.53328 1.25774 0.95431 1.02679 0.94621 0.86018 0.79394 0.79531 0.79159 1.18247 1.21746 1.18161 1.21206 0.90409 0.92997 1.48778 0.94360 1.19874 0.94563 0.92735 0.93903 0.94578 1.23272 0.97718 0.93828 0.94924 1.63572 1.46320 1.07840 1.11330 1.22873 0.95447 0.98247 0.90428 1.22054 0.97643 1.00033 0.93021 0.88217 1.20732 0.79233 0.82447 0.86616 1.43567 1.51363 1.13806 1.30599 1.90671 1.63837 1.45340 1.47214 0.92661 0.92360 0.95038 0.83921 0.92848 0.86740 0.74966 0.76083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.14 13.96 21.45 0.30 -60.84 15 2 C 0.01 0.69 5.37 84.66 0.45 1.15 15 3 Si 0.93 46.96 24.82 68.60 1.70 48.66 15 4 H -0.26 -12.03 6.95 99.48 0.69 -11.34 15 5 H -0.29 -14.45 7.11 99.48 0.71 -13.75 15 6 H -0.26 -12.70 6.49 99.48 0.65 -12.05 15 7 C -0.50 -29.26 9.09 25.60 0.23 -29.03 15 8 H 0.04 2.45 7.60 -2.91 -0.02 2.43 15 9 C 0.01 0.44 2.08 -10.65 -0.02 0.42 15 10 H 0.04 1.97 5.40 -2.38 -0.01 1.96 15 11 C 0.03 1.38 5.65 86.45 0.49 1.87 15 12 N -0.66 -22.94 7.62 -500.79 -3.82 -26.76 15 13 C 0.06 1.71 6.97 86.47 0.60 2.31 15 14 C -0.11 -3.99 3.08 -10.63 -0.03 -4.02 15 15 H 0.10 3.88 7.42 -2.39 -0.02 3.86 15 16 C 0.52 18.44 7.29 87.66 0.64 19.08 15 17 N -0.83 -17.69 8.83 -173.53 -1.53 -19.22 15 18 O -0.59 -26.90 16.09 -3.02 -0.05 -26.95 15 19 H 0.26 15.98 8.31 -92.71 -0.77 15.21 15 20 H 0.06 2.75 5.27 -2.39 -0.01 2.74 15 21 H 0.03 1.24 8.14 -2.39 -0.02 1.22 15 22 H 0.34 9.40 8.92 -89.70 -0.80 8.60 15 23 H 0.05 1.33 7.86 -2.38 -0.02 1.31 15 24 H 0.11 2.49 8.14 -2.39 -0.02 2.47 15 25 H 0.42 5.80 8.83 -92.71 -0.82 4.98 15 26 H 0.41 7.29 8.93 -92.70 -0.83 6.47 15 Total: -1.00 -76.91 216.23 -2.33 -79.24 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -1.30 Total: 14.10 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 2.36 Total: -8.23 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -5.05 Total: -106.82 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.95 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.70 Total: 48.66 kcal Total: -76.91 -2.33 -79.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215379787.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.787 kcal (2) G-P(sol) polarization free energy of solvation -76.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds