Wall clock time and date at job start Mon Mar 30 2020 02:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.27639 * 300.70246 * 9 7 2 11 11 C 1.53992 * 110.31116 * 62.79022 * 9 7 2 12 12 N 1.47902 * 107.05683 * 117.68838 * 11 9 7 13 13 C 1.48525 * 105.82088 * 25.33391 * 12 11 9 14 14 C 1.54593 * 110.31021 * 178.61415 * 9 7 2 15 15 H 1.09005 * 110.72292 * 337.48145 * 14 9 7 16 16 C 1.50697 * 110.72730 * 100.76656 * 14 9 7 17 17 N 1.34773 * 120.00324 * 180.02562 * 16 14 9 18 18 O 1.21287 * 119.99925 * 0.02562 * 16 14 9 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.92185 * 237.04472 * 11 9 7 21 21 H 1.08997 * 109.91610 * 358.14091 * 11 9 7 22 22 H 1.00894 * 111.00341 * 264.81680 * 12 11 9 23 23 H 1.09003 * 110.66891 * 79.22581 * 13 12 11 24 24 H 1.09005 * 110.67094 * 202.35463 * 13 12 11 25 25 H 0.97010 * 120.00011 * 359.97438 * 17 16 14 26 26 H 0.96999 * 120.00298 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6104 -2.5654 0.8789 11 6 0.4114 -2.6316 -1.2846 12 7 0.9212 -3.8113 -2.0166 13 6 1.5359 -4.6907 -0.9894 14 6 2.2379 -3.6886 -0.0362 15 1 3.2005 -3.3791 -0.4435 16 6 2.4053 -4.2841 1.3379 17 7 3.2281 -5.3357 1.5210 18 8 1.7996 -3.8171 2.2792 19 1 -0.4850 0.8401 0.0004 20 1 -0.6380 -2.7783 -1.0287 21 1 0.5228 -1.7355 -1.8951 22 1 1.5992 -3.5398 -2.7127 23 1 0.7696 -5.2539 -0.4567 24 1 2.2629 -5.3635 -1.4441 25 1 3.7124 -5.7096 0.7681 26 1 3.3356 -5.7193 2.4054 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215379829.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:22 Heat of formation + Delta-G solvation = -74.537510 kcal Electronic energy + Delta-G solvation = -11469.462829 eV Core-core repulsion = 9353.159858 eV Total energy + Delta-G solvation = -2116.302971 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.86592 -38.44704 -34.85211 -34.42132 -31.15597 -29.76282 -26.34876 -23.64343 -22.22985 -20.47440 -18.63819 -18.20975 -17.47634 -17.03545 -16.23687 -15.85104 -15.36577 -14.45074 -14.24127 -13.73167 -13.42835 -12.81800 -12.62804 -12.47533 -12.38558 -11.79544 -11.28462 -11.02513 -10.78858 -10.62337 -10.56446 -9.41738 -8.14595 -6.24276 1.38947 1.41775 1.48857 1.76872 2.41081 2.74361 3.17964 3.52939 3.93569 4.18365 4.38643 4.65835 4.78295 4.86537 5.05229 5.13403 5.50984 5.69193 5.80791 5.99466 6.06635 6.24321 6.59979 6.66798 6.87451 7.41618 7.51182 8.95150 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.043478 B = 0.014805 C = 0.012536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.849710 B = 1890.841449 C = 2232.969262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.008 3.992 3 Si 0.957 3.043 4 H -0.285 1.285 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.029 3.971 10 H 0.001 0.999 11 C 0.081 3.919 12 N -0.674 5.674 13 C 0.065 3.935 14 C -0.140 4.140 15 H 0.107 0.893 16 C 0.526 3.474 17 N -0.832 5.832 18 O -0.594 6.594 19 H 0.261 0.739 20 H 0.027 0.973 21 H 0.047 0.953 22 H 0.343 0.657 23 H 0.065 0.935 24 H 0.119 0.881 25 H 0.418 0.582 26 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.944 -9.690 -3.186 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.191 4.191 3 Si 0.782 3.218 4 H -0.210 1.210 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.073 0.927 9 C 0.009 3.991 10 H 0.019 0.981 11 C -0.049 4.049 12 N -0.301 5.301 13 C -0.065 4.065 14 C -0.163 4.163 15 H 0.125 0.875 16 C 0.311 3.689 17 N -0.396 5.396 18 O -0.473 6.473 19 H 0.070 0.930 20 H 0.045 0.955 21 H 0.065 0.935 22 H 0.159 0.841 23 H 0.083 0.917 24 H 0.137 0.863 25 H 0.250 0.750 26 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 6.678 -9.518 -2.821 11.965 hybrid contribution 1.070 1.400 0.663 1.883 sum 7.748 -8.118 -2.158 11.428 Atomic orbital electron populations 1.70108 1.07394 1.27424 1.50983 1.25819 0.95705 1.02710 0.94848 0.85628 0.78365 0.78909 0.78854 1.21023 1.20385 1.18608 1.21445 0.92722 0.91632 1.50922 0.92686 1.19711 0.92981 0.92109 0.94325 0.98100 1.22369 0.96735 0.90827 0.94997 1.62788 1.37816 1.15941 1.13567 1.23102 0.97401 0.94559 0.91433 1.23016 1.02125 0.98100 0.93021 0.87482 1.20731 0.77771 0.79574 0.90828 1.43581 1.47355 1.33466 1.15244 1.90701 1.48985 1.62631 1.45026 0.93006 0.95452 0.93463 0.84145 0.91678 0.86258 0.75035 0.76392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.83 12.42 21.45 0.27 -55.57 15 2 C 0.01 0.46 5.09 84.66 0.43 0.89 15 3 Si 0.96 44.74 29.54 68.60 2.03 46.77 15 4 H -0.28 -13.11 7.11 99.48 0.71 -12.41 15 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 15 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 15 7 C -0.53 -29.81 8.36 25.60 0.21 -29.60 15 8 H 0.05 2.98 7.56 -2.91 -0.02 2.96 15 9 C 0.03 1.52 2.30 -10.66 -0.02 1.50 15 10 H 0.00 0.05 6.85 -2.39 -0.02 0.04 15 11 C 0.08 3.92 6.37 86.45 0.55 4.47 15 12 N -0.67 -24.74 7.51 -501.91 -3.77 -28.51 15 13 C 0.07 2.03 6.99 86.71 0.61 2.64 15 14 C -0.14 -5.38 2.99 -10.28 -0.03 -5.41 15 15 H 0.11 3.78 7.69 -2.38 -0.02 3.76 15 16 C 0.53 20.07 7.41 87.66 0.65 20.72 15 17 N -0.83 -19.47 8.87 -173.53 -1.54 -21.01 15 18 O -0.59 -30.13 16.27 -3.05 -0.05 -30.18 15 19 H 0.26 15.09 8.31 -92.71 -0.77 14.32 15 20 H 0.03 1.44 8.14 -2.38 -0.02 1.42 15 21 H 0.05 2.48 7.21 -2.39 -0.02 2.47 15 22 H 0.34 11.02 8.92 -89.70 -0.80 10.22 15 23 H 0.06 2.15 8.04 -2.39 -0.02 2.13 15 24 H 0.12 2.46 8.14 -2.38 -0.02 2.44 15 25 H 0.42 6.23 8.83 -92.70 -0.82 5.41 15 26 H 0.40 8.25 8.93 -92.71 -0.83 7.42 15 Total: -1.00 -74.19 224.05 -1.90 -76.09 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -1.23 Total: 17.20 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 2.40 Total: -4.79 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -5.04 Total: -105.09 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.05 Total: -30.18 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -74.19 -1.90 -76.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215379829.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.551 kcal (2) G-P(sol) polarization free energy of solvation -74.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds