Wall clock time and date at job start Mon Mar 30 2020 02:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99793 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.85712 * 325.70305 * 11 10 9 13 13 C 1.54476 * 110.97011 * 201.91352 * 11 10 9 14 14 N 1.46764 * 105.47560 * 216.46716 * 13 11 10 15 15 C 1.34419 * 111.29792 * 17.01297 * 14 13 11 16 16 O 1.21279 * 124.94323 * 179.61373 * 15 14 13 17 17 C 1.51346 * 110.13165 * 359.56531 * 15 14 13 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.00898 * 110.99877 * 56.04636 * 10 9 7 22 22 H 1.09001 * 110.24650 * 335.46676 * 13 11 10 23 23 H 1.08999 * 110.25019 * 97.46571 * 13 11 10 24 24 H 0.96999 * 124.34904 * 197.03451 * 14 13 11 25 25 H 1.08996 * 110.52039 * 225.11669 * 17 15 14 26 26 H 1.09003 * 110.47651 * 102.45215 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9071 0.0011 12 1 0.5807 -4.8469 0.5754 13 6 2.4181 -6.0309 0.5395 14 7 2.0867 -7.2193 -0.2554 15 6 1.4242 -6.8872 -1.3770 16 8 1.0378 -7.6748 -2.2144 17 6 1.2296 -5.3878 -1.4424 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 2.8404 -3.5487 0.7819 22 1 3.4660 -5.7646 0.4008 23 1 2.2108 -6.2127 1.5940 24 1 2.3159 -8.1275 -0.0037 25 1 0.2078 -5.1476 -1.7360 26 1 1.9419 -4.9407 -2.1359 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229149289.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:31 Heat of formation + Delta-G solvation = -65.591535 kcal Electronic energy + Delta-G solvation = -10895.300988 eV Core-core repulsion = 8779.385944 eV Total energy + Delta-G solvation = -2115.915045 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.24601 -38.07644 -36.02556 -34.29168 -31.12795 -28.99726 -27.26757 -23.80187 -22.05584 -21.49500 -18.57729 -18.30704 -17.45164 -16.65412 -16.08698 -15.74953 -15.10355 -14.67007 -14.38609 -14.10247 -13.87095 -13.48741 -12.77632 -12.68970 -12.37698 -12.13977 -11.83241 -11.31419 -11.01992 -10.63321 -10.12820 -9.18870 -8.19733 -6.30060 1.45433 1.46621 1.50670 1.57350 2.39202 2.44256 3.15084 3.27751 3.50886 3.68714 4.09204 4.38813 4.65696 4.67146 4.87261 4.95151 5.20354 5.30025 5.65225 5.79689 5.95831 6.05691 6.42929 6.73828 6.92765 7.22465 7.41160 8.91788 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.090229 B = 0.007967 C = 0.007702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.248210 B = 3513.638694 C = 3634.593046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.534 4.534 8 H 0.069 0.931 9 C 0.207 3.793 10 N -0.672 5.672 11 C 0.069 3.931 12 H 0.055 0.945 13 C 0.111 3.889 14 N -0.712 5.712 15 C 0.524 3.476 16 O -0.586 6.586 17 C -0.147 4.147 18 H 0.264 0.736 19 H -0.032 1.032 20 H 0.001 0.999 21 H 0.347 0.653 22 H 0.096 0.904 23 H 0.109 0.891 24 H 0.421 0.579 25 H 0.086 0.914 26 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.718 -9.048 3.727 11.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.572 4.572 8 H 0.087 0.913 9 C 0.079 3.921 10 N -0.304 5.304 11 C -0.042 4.042 12 H 0.073 0.927 13 C -0.014 4.014 14 N -0.368 5.368 15 C 0.311 3.689 16 O -0.467 6.467 17 C -0.188 4.188 18 H 0.073 0.927 19 H -0.014 1.014 20 H 0.019 0.981 21 H 0.166 0.834 22 H 0.114 0.886 23 H 0.128 0.872 24 H 0.262 0.738 25 H 0.105 0.895 26 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.449 -9.212 2.620 11.019 hybrid contribution -0.336 0.606 0.819 1.073 sum 5.112 -8.606 3.439 10.584 Atomic orbital electron populations 1.70085 1.07819 1.27927 1.51693 1.25909 0.95689 1.03310 0.94746 0.85367 0.78661 0.78214 0.78254 1.20266 1.21080 1.18418 1.21569 0.94014 0.91305 1.50296 0.91300 1.19264 0.90621 0.88554 0.93648 1.60566 1.20027 1.00188 1.49623 1.22394 0.96850 0.90476 0.94472 0.92747 1.22320 1.00013 0.82685 0.96337 1.46071 1.57408 1.10805 1.22468 1.21032 0.75973 0.91082 0.80829 1.90691 1.54107 1.58081 1.43805 1.22404 1.04428 0.91897 1.00049 0.92728 1.01396 0.98063 0.83421 0.88579 0.87238 0.73831 0.89543 0.87367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.02 13.29 21.45 0.28 -54.73 15 2 C 0.00 0.09 5.46 84.66 0.46 0.56 15 3 Si 0.97 42.79 29.54 68.60 2.03 44.82 15 4 H -0.28 -12.02 7.11 99.48 0.71 -11.31 15 5 H -0.29 -12.39 7.11 99.48 0.71 -11.68 15 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 15 7 C -0.53 -28.72 9.32 25.60 0.24 -28.48 15 8 H 0.07 3.55 7.81 -2.91 -0.02 3.53 15 9 C 0.21 10.26 5.32 85.56 0.46 10.72 15 10 N -0.67 -24.95 6.30 -490.12 -3.09 -28.04 15 11 C 0.07 2.09 3.45 45.97 0.16 2.24 15 12 H 0.05 1.73 7.87 -2.39 -0.02 1.72 15 13 C 0.11 2.25 7.26 86.83 0.63 2.88 15 14 N -0.71 -15.79 6.24 -459.74 -2.87 -18.66 15 15 C 0.52 16.28 8.43 87.92 0.74 17.02 15 16 O -0.59 -22.68 18.03 -3.03 -0.05 -22.74 15 17 C -0.15 -4.71 6.59 30.61 0.20 -4.51 15 18 H 0.26 14.66 8.31 -92.71 -0.77 13.89 15 19 H -0.03 -1.68 8.09 -2.39 -0.02 -1.70 15 20 H 0.00 0.07 8.14 -2.39 -0.02 0.05 15 21 H 0.35 11.45 8.45 -89.70 -0.76 10.69 15 22 H 0.10 1.77 8.05 -2.39 -0.02 1.75 15 23 H 0.11 1.62 8.14 -2.39 -0.02 1.60 15 24 H 0.42 7.15 8.96 -92.71 -0.83 6.31 15 25 H 0.09 2.92 8.14 -2.39 -0.02 2.90 15 26 H 0.11 3.64 8.08 -2.39 -0.02 3.62 15 Total: -1.00 -66.48 230.58 -1.21 -67.68 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -0.40 Total: 11.25 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 2.89 Total: 0.42 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -5.67 Total: -101.43 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.05 Total: -22.74 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -66.48 -1.21 -67.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229149289.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.091 kcal (2) G-P(sol) polarization free energy of solvation -66.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds