Wall clock time and date at job start Mon Mar 30 2020 02:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99847 * 2 1 4 4 H 1.48498 * 109.47149 * 270.00017 * 3 2 1 5 5 H 1.48498 * 109.47001 * 29.99843 * 3 2 1 6 6 H 1.48498 * 109.46793 * 149.99943 * 3 2 1 7 7 C 1.37871 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00417 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99889 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47134 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99876 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.85744 * 34.30425 * 11 10 9 13 13 C 1.54480 * 110.96949 * 158.09241 * 11 10 9 14 14 N 1.46758 * 105.47394 * 143.56935 * 13 11 10 15 15 C 1.34420 * 111.30351 * 342.98618 * 14 13 11 16 16 O 1.21284 * 124.94458 * 180.36585 * 15 14 13 17 17 C 1.51279 * 110.11334 * 0.40485 * 15 14 13 18 18 H 0.97002 * 120.00313 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47005 * 60.00549 * 9 7 2 20 20 H 1.09000 * 109.47349 * 300.00088 * 9 7 2 21 21 H 1.00891 * 111.00194 * 303.95561 * 10 9 7 22 22 H 1.09001 * 110.24796 * 262.57600 * 13 11 10 23 23 H 1.09005 * 110.24162 * 24.57191 * 13 11 10 24 24 H 0.97003 * 124.35196 * 162.96074 * 14 13 11 25 25 H 1.09000 * 110.48687 * 257.57051 * 17 15 14 26 26 H 1.09002 * 110.48672 * 134.92846 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5790 0.0013 11 6 5.4697 -2.6182 0.0014 12 1 5.8801 -1.7868 0.5747 13 6 5.9867 -3.9702 0.5409 14 7 7.1817 -4.2777 -0.2535 15 6 7.2255 -3.5389 -1.3757 16 8 8.1012 -3.5983 -2.2127 17 6 6.0241 -2.6220 -1.4421 18 1 -0.4851 0.8400 -0.0004 19 1 3.8752 -0.6796 0.8895 20 1 3.8746 -0.6808 -0.8905 21 1 3.6261 -3.0944 0.7833 22 1 6.2475 -3.8807 1.5955 23 1 5.2322 -4.7447 0.4027 24 1 7.8538 -4.9300 -0.0012 25 1 5.2810 -3.0165 -2.1351 26 1 6.3268 -1.6173 -1.7371 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229149303.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:33 Heat of formation + Delta-G solvation = -35.802074 kcal Electronic energy + Delta-G solvation = -10941.050014 eV Core-core repulsion = 8826.426737 eV Total energy + Delta-G solvation = -2114.623277 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.08001 -36.77976 -34.53177 -32.40567 -29.92415 -27.81924 -25.90870 -21.55247 -20.88250 -20.27949 -17.30284 -16.83424 -16.20863 -15.00401 -14.76857 -14.15064 -13.72154 -13.21838 -13.07509 -12.98360 -12.51897 -11.94622 -11.39151 -11.00475 -10.65011 -10.54011 -9.99635 -9.73743 -9.37702 -9.08908 -8.65967 -7.73590 -6.12543 -4.11775 2.71682 3.24804 3.32390 3.33167 3.41626 4.35727 4.48623 4.62051 4.81057 5.19431 5.20683 5.46208 5.63979 5.73656 6.00463 6.18896 6.66008 6.83036 6.88315 7.01147 7.48099 7.72734 8.11958 8.32718 8.53632 8.94626 9.48512 11.00498 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.071126 B = 0.009056 C = 0.008538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.575340 B = 3091.218782 C = 3278.702826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.163 3.837 10 N -0.667 5.667 11 C 0.070 3.930 12 H 0.060 0.940 13 C 0.100 3.900 14 N -0.733 5.733 15 C 0.523 3.477 16 O -0.546 6.546 17 C -0.148 4.148 18 H 0.265 0.735 19 H -0.012 1.012 20 H 0.025 0.975 21 H 0.341 0.659 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.406 0.594 25 H 0.118 0.882 26 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.914 -5.205 2.782 12.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.558 4.558 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.299 5.299 11 C -0.041 4.041 12 H 0.077 0.923 13 C -0.025 4.025 14 N -0.388 5.388 15 C 0.310 3.690 16 O -0.424 6.424 17 C -0.189 4.189 18 H 0.075 0.925 19 H 0.005 0.995 20 H 0.043 0.957 21 H 0.160 0.840 22 H 0.095 0.905 23 H 0.100 0.900 24 H 0.244 0.756 25 H 0.136 0.864 26 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.048 -5.083 1.634 12.271 hybrid contribution 0.740 0.930 1.095 1.616 sum 11.789 -4.152 2.729 12.793 Atomic orbital electron populations 1.69893 1.06185 1.27013 1.50574 1.24896 0.94747 0.98970 0.94588 0.86836 0.80194 0.83841 0.78710 1.20032 1.21163 1.19271 1.21015 0.88752 0.94905 1.51140 0.90175 1.20082 0.96818 0.84439 0.95098 1.60584 1.02283 1.17567 1.49428 1.22427 0.91739 0.95293 0.94689 0.92256 1.22286 0.87150 0.97954 0.95139 1.46212 1.25973 1.42800 1.23847 1.21112 0.86716 0.80775 0.80406 1.90717 1.40174 1.69309 1.42160 1.22474 0.96167 1.00515 0.99703 0.92537 0.99463 0.95683 0.84008 0.90539 0.89964 0.75638 0.86390 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.96 55.43 0.77 -26.13 15 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 15 3 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 15 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.27 -6.10 6.54 56.52 0.37 -5.73 15 7 C -0.52 -14.18 9.87 -34.44 -0.34 -14.52 15 8 H 0.08 2.37 8.06 -52.49 -0.42 1.94 15 9 C 0.16 3.68 4.39 -4.97 -0.02 3.66 15 10 N -0.67 -12.13 6.30 -106.26 -0.67 -12.80 15 11 C 0.07 1.02 3.45 -66.08 -0.23 0.80 15 12 H 0.06 0.87 7.87 -51.93 -0.41 0.46 15 13 C 0.10 1.11 7.26 -3.13 -0.02 1.09 15 14 N -0.73 -8.65 6.24 -59.20 -0.37 -9.02 15 15 C 0.52 8.00 8.43 -10.86 -0.09 7.91 15 16 O -0.55 -10.28 18.03 5.55 0.10 -10.18 15 17 C -0.15 -2.23 6.58 -26.74 -0.18 -2.40 15 18 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 19 H -0.01 -0.28 7.14 -51.93 -0.37 -0.65 15 20 H 0.03 0.58 7.57 -51.93 -0.39 0.18 15 21 H 0.34 5.79 8.45 -39.30 -0.33 5.46 15 22 H 0.08 0.69 8.14 -51.93 -0.42 0.26 15 23 H 0.08 0.89 8.05 -51.93 -0.42 0.47 15 24 H 0.41 3.88 8.96 -40.82 -0.37 3.51 15 25 H 0.12 1.86 8.08 -51.93 -0.42 1.44 15 26 H 0.10 1.43 8.14 -51.93 -0.42 1.00 15 LS Contribution 226.98 15.07 3.42 3.42 Total: -1.00 -31.55 226.98 -5.53 -37.08 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -3.14 Total: 3.00 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -0.98 Total: -1.60 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.27 Total: -47.94 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.10 Total: -10.18 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -31.55 -5.53 -37.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229149303.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.283 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds