Wall clock time and date at job start Mon Mar 30 2020 02:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99847 * 2 1 4 4 H 1.48498 * 109.47149 * 270.00017 * 3 2 1 5 5 H 1.48498 * 109.47001 * 29.99843 * 3 2 1 6 6 H 1.48498 * 109.46793 * 149.99943 * 3 2 1 7 7 C 1.37871 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00417 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99889 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47134 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99876 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.85744 * 34.30425 * 11 10 9 13 13 C 1.54480 * 110.96949 * 158.09241 * 11 10 9 14 14 N 1.46758 * 105.47394 * 143.56935 * 13 11 10 15 15 C 1.34420 * 111.30351 * 342.98618 * 14 13 11 16 16 O 1.21284 * 124.94458 * 180.36585 * 15 14 13 17 17 C 1.51279 * 110.11334 * 0.40485 * 15 14 13 18 18 H 0.97002 * 120.00313 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47005 * 60.00549 * 9 7 2 20 20 H 1.09000 * 109.47349 * 300.00088 * 9 7 2 21 21 H 1.00891 * 111.00194 * 303.95561 * 10 9 7 22 22 H 1.09001 * 110.24796 * 262.57600 * 13 11 10 23 23 H 1.09005 * 110.24162 * 24.57191 * 13 11 10 24 24 H 0.97003 * 124.35196 * 162.96074 * 14 13 11 25 25 H 1.09000 * 110.48687 * 257.57051 * 17 15 14 26 26 H 1.09002 * 110.48672 * 134.92846 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5790 0.0013 11 6 5.4697 -2.6182 0.0014 12 1 5.8801 -1.7868 0.5747 13 6 5.9867 -3.9702 0.5409 14 7 7.1817 -4.2777 -0.2535 15 6 7.2255 -3.5389 -1.3757 16 8 8.1012 -3.5983 -2.2127 17 6 6.0241 -2.6220 -1.4421 18 1 -0.4851 0.8400 -0.0004 19 1 3.8752 -0.6796 0.8895 20 1 3.8746 -0.6808 -0.8905 21 1 3.6261 -3.0944 0.7833 22 1 6.2475 -3.8807 1.5955 23 1 5.2322 -4.7447 0.4027 24 1 7.8538 -4.9300 -0.0012 25 1 5.2810 -3.0165 -2.1351 26 1 6.3268 -1.6173 -1.7371 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229149303.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:33 Heat of formation + Delta-G solvation = -62.356061 kcal Electronic energy + Delta-G solvation = -10942.201481 eV Core-core repulsion = 8826.426737 eV Total energy + Delta-G solvation = -2115.774744 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.24514 -38.09990 -36.03771 -34.34081 -31.33798 -29.24643 -27.37972 -23.35343 -22.09823 -21.47313 -18.93347 -18.34883 -17.43908 -16.67313 -16.03610 -15.69975 -15.25386 -14.55571 -14.44780 -14.38653 -14.04539 -13.64735 -12.81544 -12.66087 -12.21639 -11.96359 -11.84424 -11.47184 -11.02492 -10.78106 -10.12475 -9.21436 -8.27204 -6.31542 1.39273 1.39677 1.49760 1.51948 2.36436 2.41285 3.07885 3.22468 3.48964 3.67942 4.09925 4.34795 4.66281 4.67644 4.78663 4.89387 5.03787 5.10488 5.56385 5.80756 5.90949 6.01378 6.54504 6.67111 6.79892 7.22883 7.33722 8.89305 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.071126 B = 0.009056 C = 0.008538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.575340 B = 3091.218782 C = 3278.702826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.947 3.053 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.526 4.526 8 H 0.041 0.959 9 C 0.173 3.827 10 N -0.673 5.673 11 C 0.069 3.931 12 H 0.068 0.932 13 C 0.108 3.892 14 N -0.714 5.714 15 C 0.522 3.478 16 O -0.587 6.587 17 C -0.149 4.149 18 H 0.267 0.733 19 H -0.005 1.005 20 H 0.024 0.976 21 H 0.349 0.651 22 H 0.111 0.889 23 H 0.091 0.909 24 H 0.420 0.580 25 H 0.107 0.893 26 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.678 -5.021 3.756 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.771 3.229 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.565 4.565 8 H 0.060 0.940 9 C 0.045 3.955 10 N -0.306 5.306 11 C -0.042 4.042 12 H 0.086 0.914 13 C -0.016 4.016 14 N -0.369 5.369 15 C 0.310 3.690 16 O -0.468 6.468 17 C -0.190 4.190 18 H 0.076 0.924 19 H 0.013 0.987 20 H 0.042 0.958 21 H 0.168 0.832 22 H 0.129 0.871 23 H 0.109 0.891 24 H 0.261 0.739 25 H 0.125 0.875 26 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.830 -4.944 2.648 14.002 hybrid contribution 0.140 0.760 0.805 1.116 sum 12.970 -4.184 3.453 14.059 Atomic orbital electron populations 1.70051 1.08224 1.28151 1.52468 1.25844 0.95545 1.03218 0.94296 0.85719 0.79514 0.78625 0.79086 1.19490 1.21018 1.16911 1.21350 0.91470 0.93460 1.50180 0.94033 1.19815 0.93557 0.86989 0.95180 1.60375 1.04856 1.15162 1.50181 1.22451 0.89291 0.97801 0.94669 0.91420 1.22325 0.86841 0.96003 0.96468 1.46101 1.26251 1.41976 1.22546 1.21076 0.86137 0.81085 0.80751 1.90700 1.41578 1.70698 1.43797 1.22444 0.95993 1.00598 0.99977 0.92449 0.98691 0.95751 0.83182 0.87077 0.89081 0.73937 0.87457 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.88 13.96 21.45 0.30 -57.58 15 2 C 0.01 0.48 5.47 84.65 0.46 0.94 15 3 Si 0.95 42.40 27.47 68.60 1.88 44.28 15 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 15 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 15 6 H -0.25 -10.03 6.54 99.48 0.65 -9.38 15 7 C -0.53 -28.85 9.87 25.60 0.25 -28.60 15 8 H 0.04 2.53 8.06 -2.91 -0.02 2.50 15 9 C 0.17 7.51 4.39 85.56 0.38 7.89 15 10 N -0.67 -23.26 6.30 -490.10 -3.09 -26.35 15 11 C 0.07 1.81 3.45 45.97 0.16 1.97 15 12 H 0.07 1.74 7.87 -2.39 -0.02 1.72 15 13 C 0.11 1.99 7.26 86.83 0.63 2.62 15 14 N -0.71 -14.58 6.24 -459.81 -2.87 -17.45 15 15 C 0.52 15.02 8.43 87.90 0.74 15.76 15 16 O -0.59 -21.55 18.03 -3.04 -0.05 -21.61 15 17 C -0.15 -4.25 6.58 30.59 0.20 -4.05 15 18 H 0.27 15.20 8.31 -92.71 -0.77 14.43 15 19 H 0.00 -0.19 7.14 -2.39 -0.02 -0.21 15 20 H 0.02 1.07 7.57 -2.39 -0.02 1.05 15 21 H 0.35 11.18 8.45 -89.70 -0.76 10.42 15 22 H 0.11 1.41 8.14 -2.39 -0.02 1.39 15 23 H 0.09 1.62 8.05 -2.38 -0.02 1.60 15 24 H 0.42 6.60 8.96 -92.71 -0.83 5.77 15 25 H 0.11 3.30 8.08 -2.39 -0.02 3.28 15 26 H 0.10 2.71 8.14 -2.39 -0.02 2.69 15 Total: -1.00 -68.42 226.98 -1.45 -69.87 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -0.45 Total: 12.30 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 2.82 Total: -3.46 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -5.66 Total: -101.39 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.61 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.28 kcal Total: -68.42 -1.45 -69.87 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229149303.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.512 kcal (2) G-P(sol) polarization free energy of solvation -68.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds