Wall clock time and date at job start Mon Mar 30 2020 02:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47211 * 2 1 4 4 H 1.08995 * 110.02130 * 54.93450 * 3 2 1 5 5 C 1.54265 * 110.03213 * 293.54169 * 3 2 1 6 6 C 1.54887 * 104.20056 * 217.05730 * 5 3 2 7 7 C 1.54890 * 102.91108 * 37.84875 * 6 5 3 8 8 C 1.53877 * 110.07490 * 176.35278 * 3 2 1 9 9 O 1.42906 * 110.03186 * 0.02562 * 8 3 2 10 10 C 1.50699 * 110.03376 * 238.63666 * 8 3 2 11 11 H 1.08000 * 120.00152 * 0.02562 * 10 8 3 12 12 C 1.37879 * 119.99971 * 179.97438 * 10 8 3 13 13 N 1.31513 * 120.00053 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 119.99700 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47540 * 60.00658 * 14 12 10 16 16 H 1.48502 * 109.47222 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47331 * 300.00289 * 14 12 10 18 18 H 1.08995 * 109.46774 * 179.97438 * 1 2 3 19 19 H 1.08993 * 109.47441 * 300.00386 * 1 2 3 20 20 H 1.08996 * 109.46915 * 60.00489 * 1 2 3 21 21 H 1.08999 * 109.47335 * 239.99189 * 2 1 3 22 22 H 1.09012 * 109.47152 * 119.99830 * 2 1 3 23 23 H 1.09004 * 110.48891 * 98.37703 * 5 3 2 24 24 H 1.09004 * 110.59809 * 335.79343 * 5 3 2 25 25 H 1.09002 * 110.75856 * 156.25785 * 6 5 3 26 26 H 1.09006 * 110.75640 * 279.44771 * 6 5 3 27 27 H 1.09003 * 110.48855 * 80.83451 * 7 6 5 28 28 H 1.09003 * 110.48748 * 203.47148 * 7 6 5 29 29 H 0.96698 * 113.99797 * 180.02562 * 9 8 3 30 30 H 0.97001 * 119.99841 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6097 1.9904 0.8382 5 6 1.6704 2.1336 -1.3287 6 6 2.8913 3.0341 -1.6411 7 6 4.0887 2.1648 -1.1831 8 6 3.5759 1.4596 0.0919 9 8 4.0778 0.1229 0.1499 10 6 4.0115 2.2277 1.3132 11 1 3.2724 2.6653 1.9679 12 6 5.3535 2.3709 1.5952 13 7 6.2535 1.8376 0.7982 14 14 5.8932 3.3223 3.1094 15 1 5.3384 2.6744 4.3250 16 1 7.3762 3.3311 3.1859 17 1 5.3943 4.7181 3.0209 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 1.8934 -0.5139 -0.8899 22 1 1.8934 -0.5139 0.8901 23 1 0.7716 2.7383 -1.2071 24 1 1.5286 1.3957 -2.1184 25 1 2.9528 3.2448 -2.7087 26 1 2.8449 3.9602 -1.0681 27 1 4.3416 1.4305 -1.9479 28 1 4.9506 2.7921 -0.9555 29 1 5.0413 0.0668 0.2094 30 1 7.1976 1.9380 0.9969 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229707683.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:12 Heat of formation + Delta-G solvation = -79.254607 kcal Electronic energy + Delta-G solvation = -12007.102489 eV Core-core repulsion = 9994.135312 eV Total energy + Delta-G solvation = -2012.967176 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.06242 -33.87025 -32.29415 -31.75908 -27.28583 -26.57154 -24.24508 -21.54771 -19.71788 -18.25825 -16.79701 -14.97145 -14.65286 -14.15654 -13.63468 -13.38715 -12.68701 -12.24715 -11.69047 -11.58733 -11.35758 -11.09838 -10.70452 -10.64083 -10.34212 -10.25354 -9.90534 -9.81705 -9.50573 -9.41958 -8.83559 -8.44802 -7.91631 -6.10385 -4.18831 3.28202 3.32822 3.36032 4.37384 5.15099 5.64139 5.67517 5.73376 5.93029 5.99636 6.09267 6.32138 6.48991 6.51640 6.53254 6.68848 6.71437 6.83489 6.86832 7.12594 7.24695 7.28593 7.43813 7.64806 7.74894 7.96622 8.33536 8.84139 9.49433 9.69678 10.94767 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.047343 B = 0.014577 C = 0.013660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.283539 B = 1920.338068 C = 2049.236922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.076 4.076 4 H 0.064 0.936 5 C -0.115 4.115 6 C -0.122 4.122 7 C -0.128 4.128 8 C 0.252 3.748 9 O -0.590 6.590 10 C -0.527 4.527 11 H 0.057 0.943 12 C 0.066 3.934 13 N -0.898 5.898 14 Si 0.895 3.105 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 H 0.042 0.958 19 H 0.046 0.954 20 H 0.046 0.954 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.377 0.623 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.610 0.011 -2.448 6.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.135 4.135 3 C -0.094 4.094 4 H 0.083 0.917 5 C -0.153 4.153 6 C -0.159 4.159 7 C -0.166 4.166 8 C 0.213 3.787 9 O -0.399 6.399 10 C -0.566 4.566 11 H 0.075 0.925 12 C -0.135 4.135 13 N -0.539 5.539 14 Si 0.723 3.277 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.203 1.203 18 H 0.061 0.939 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.227 0.773 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.053 -0.153 -2.499 6.551 hybrid contribution 1.021 0.785 0.859 1.548 sum -5.032 0.632 -1.640 5.330 Atomic orbital electron populations 1.21878 0.97999 1.00150 1.00897 1.21231 0.92617 0.97376 1.02307 1.21813 0.96783 0.94823 0.96025 0.91722 1.22394 0.97118 0.98089 0.97708 1.22388 0.96461 0.98636 0.98451 1.22920 0.97457 0.98462 0.97811 1.19243 0.87638 0.80152 0.91711 1.86127 1.27547 1.29314 1.96922 1.21824 0.91924 1.33460 1.09368 0.92487 1.25012 0.96643 0.95265 0.96561 1.69637 1.01341 1.45649 1.37288 0.86602 0.77321 0.80386 0.83359 1.20191 1.21244 1.20265 0.93918 0.93471 0.93460 0.92591 0.91781 0.93393 0.92744 0.93783 0.92182 0.94470 0.90526 0.77255 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.75 37.16 0.36 -2.08 16 2 C -0.10 -1.95 4.33 -26.73 -0.12 -2.06 16 3 C -0.08 -1.66 2.59 -89.50 -0.23 -1.89 16 4 H 0.06 1.44 7.37 -51.93 -0.38 1.06 16 5 C -0.12 -2.21 5.46 -25.07 -0.14 -2.35 16 6 C -0.12 -2.47 6.90 -24.74 -0.17 -2.64 16 7 C -0.13 -3.08 5.66 -24.97 -0.14 -3.22 16 8 C 0.25 6.36 0.96 -90.55 -0.09 6.27 16 9 O -0.59 -15.55 11.11 -35.23 -0.39 -15.94 16 10 C -0.53 -14.43 8.20 -34.44 -0.28 -14.71 16 11 H 0.06 1.56 7.33 -52.49 -0.38 1.17 16 12 C 0.07 1.79 4.99 -17.82 -0.09 1.70 16 13 N -0.90 -24.53 10.27 55.43 0.57 -23.96 16 14 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 19 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 20 H 0.05 0.71 7.46 -51.93 -0.39 0.32 16 21 H 0.06 1.14 7.90 -51.93 -0.41 0.73 16 22 H 0.06 1.38 7.71 -51.92 -0.40 0.98 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.99 7.79 -51.93 -0.40 0.59 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 28 H 0.08 2.01 6.55 -51.93 -0.34 1.67 16 29 H 0.38 10.25 7.09 45.56 0.32 10.57 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 237.37 15.07 3.58 3.58 Total: -1.00 -27.24 237.37 -6.21 -33.46 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -4.06 Total: 7.79 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -0.89 Total: -20.98 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.57 Total: -23.96 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.39 Total: -15.94 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.24 -6.21 -33.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229707683.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.797 kcal (2) G-P(sol) polarization free energy of solvation -27.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds