Wall clock time and date at job start Mon Mar 30 2020 02:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47211 * 2 1 4 4 H 1.08995 * 110.02130 * 54.93450 * 3 2 1 5 5 C 1.54265 * 110.03213 * 293.54169 * 3 2 1 6 6 C 1.54887 * 104.20056 * 217.05730 * 5 3 2 7 7 C 1.54890 * 102.91108 * 37.84875 * 6 5 3 8 8 C 1.53877 * 110.07490 * 176.35278 * 3 2 1 9 9 O 1.42906 * 110.03186 * 0.02562 * 8 3 2 10 10 C 1.50699 * 110.03376 * 238.63666 * 8 3 2 11 11 H 1.08000 * 120.00152 * 0.02562 * 10 8 3 12 12 C 1.37879 * 119.99971 * 179.97438 * 10 8 3 13 13 N 1.31513 * 120.00053 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 119.99700 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47540 * 60.00658 * 14 12 10 16 16 H 1.48502 * 109.47222 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47331 * 300.00289 * 14 12 10 18 18 H 1.08995 * 109.46774 * 179.97438 * 1 2 3 19 19 H 1.08993 * 109.47441 * 300.00386 * 1 2 3 20 20 H 1.08996 * 109.46915 * 60.00489 * 1 2 3 21 21 H 1.08999 * 109.47335 * 239.99189 * 2 1 3 22 22 H 1.09012 * 109.47152 * 119.99830 * 2 1 3 23 23 H 1.09004 * 110.48891 * 98.37703 * 5 3 2 24 24 H 1.09004 * 110.59809 * 335.79343 * 5 3 2 25 25 H 1.09002 * 110.75856 * 156.25785 * 6 5 3 26 26 H 1.09006 * 110.75640 * 279.44771 * 6 5 3 27 27 H 1.09003 * 110.48855 * 80.83451 * 7 6 5 28 28 H 1.09003 * 110.48748 * 203.47148 * 7 6 5 29 29 H 0.96698 * 113.99797 * 180.02562 * 9 8 3 30 30 H 0.97001 * 119.99841 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6097 1.9904 0.8382 5 6 1.6704 2.1336 -1.3287 6 6 2.8913 3.0341 -1.6411 7 6 4.0887 2.1648 -1.1831 8 6 3.5759 1.4596 0.0919 9 8 4.0778 0.1229 0.1499 10 6 4.0115 2.2277 1.3132 11 1 3.2724 2.6653 1.9679 12 6 5.3535 2.3709 1.5952 13 7 6.2535 1.8376 0.7982 14 14 5.8932 3.3223 3.1094 15 1 5.3384 2.6744 4.3250 16 1 7.3762 3.3311 3.1859 17 1 5.3943 4.7181 3.0209 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 1.8934 -0.5139 -0.8899 22 1 1.8934 -0.5139 0.8901 23 1 0.7716 2.7383 -1.2071 24 1 1.5286 1.3957 -2.1184 25 1 2.9528 3.2448 -2.7087 26 1 2.8449 3.9602 -1.0681 27 1 4.3416 1.4305 -1.9479 28 1 4.9506 2.7921 -0.9555 29 1 5.0413 0.0668 0.2094 30 1 7.1976 1.9380 0.9969 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229707683.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:12 Heat of formation + Delta-G solvation = -96.080960 kcal Electronic energy + Delta-G solvation = -12007.832134 eV Core-core repulsion = 9994.135312 eV Total energy + Delta-G solvation = -2013.696822 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.86815 -35.74916 -34.21730 -33.52055 -29.20045 -28.19771 -26.13526 -23.13869 -21.48778 -20.05748 -18.81991 -17.01652 -16.45636 -15.86766 -15.27957 -15.12100 -14.51725 -13.86175 -13.48422 -13.19288 -13.14755 -12.91306 -12.50121 -12.38308 -12.24730 -11.91148 -11.64002 -11.55652 -11.17439 -11.08644 -10.74735 -10.46762 -9.94548 -8.16235 -6.32426 1.39780 1.40657 1.48245 2.39595 3.06885 4.02585 4.05888 4.08435 4.40014 4.51784 4.60387 4.64848 4.88729 4.95195 5.00339 5.10458 5.16932 5.25141 5.31122 5.38522 5.53934 5.58052 5.62542 5.75625 5.79652 5.99820 6.30022 6.75157 7.39013 7.57477 8.86851 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.047343 B = 0.014577 C = 0.013660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.283539 B = 1920.338068 C = 2049.236922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.079 4.079 4 H 0.055 0.945 5 C -0.106 4.106 6 C -0.116 4.116 7 C -0.126 4.126 8 C 0.233 3.767 9 O -0.596 6.596 10 C -0.552 4.552 11 H 0.049 0.951 12 C 0.024 3.976 13 N -0.914 5.914 14 Si 0.954 3.046 15 H -0.276 1.276 16 H -0.281 1.281 17 H -0.272 1.272 18 H 0.060 0.940 19 H 0.050 0.950 20 H 0.064 0.936 21 H 0.048 0.952 22 H 0.036 0.964 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.045 0.955 29 H 0.368 0.632 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.950 0.559 -2.796 7.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 C -0.098 4.098 4 H 0.073 0.927 5 C -0.143 4.143 6 C -0.154 4.154 7 C -0.165 4.165 8 C 0.194 3.806 9 O -0.404 6.404 10 C -0.591 4.591 11 H 0.067 0.933 12 C -0.175 4.175 13 N -0.555 5.555 14 Si 0.780 3.220 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.197 1.197 18 H 0.079 0.921 19 H 0.070 0.930 20 H 0.083 0.917 21 H 0.067 0.933 22 H 0.055 0.945 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.217 0.783 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.407 0.397 -2.852 7.947 hybrid contribution 1.478 0.591 0.973 1.865 sum -5.930 0.987 -1.879 6.298 Atomic orbital electron populations 1.21789 0.94509 1.01772 1.01946 1.21146 0.95621 0.95692 1.00596 1.21813 0.94217 0.96283 0.97463 0.92694 1.22353 0.97535 0.98174 0.96223 1.22359 0.95113 0.97895 1.00017 1.22783 0.98010 0.98390 0.97269 1.19585 0.90099 0.79331 0.91578 1.86135 1.26781 1.30500 1.96995 1.22101 0.92259 1.34310 1.10385 0.93320 1.25699 0.96696 0.96052 0.99073 1.69733 1.01447 1.46026 1.38314 0.85678 0.77041 0.79236 0.80049 1.20140 1.20654 1.19709 0.92109 0.93050 0.91727 0.93341 0.94502 0.90481 0.91360 0.91016 0.92589 0.95032 0.93571 0.78271 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 9.75 71.98 0.70 -3.46 16 2 C -0.09 -3.60 4.33 30.59 0.13 -3.47 16 3 C -0.08 -3.37 2.59 -10.07 -0.03 -3.40 16 4 H 0.05 2.41 7.37 -2.39 -0.02 2.39 16 5 C -0.11 -3.72 5.46 31.67 0.17 -3.55 16 6 C -0.12 -4.49 6.90 31.88 0.22 -4.27 16 7 C -0.13 -6.06 5.66 31.74 0.18 -5.88 16 8 C 0.23 11.86 0.96 -10.75 -0.01 11.85 16 9 O -0.60 -32.12 11.11 -148.98 -1.66 -33.77 16 10 C -0.55 -30.61 8.20 25.60 0.21 -30.40 16 11 H 0.05 2.70 7.33 -2.91 -0.02 2.68 16 12 C 0.02 1.32 4.99 84.66 0.42 1.74 16 13 N -0.91 -50.69 10.27 21.45 0.22 -50.47 16 14 Si 0.95 43.39 29.54 68.60 2.03 45.42 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 18 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 19 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 20 H 0.06 1.67 7.46 -2.39 -0.02 1.65 16 21 H 0.05 1.92 7.90 -2.39 -0.02 1.90 16 22 H 0.04 1.59 7.71 -2.38 -0.02 1.57 16 23 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 24 H 0.07 2.24 7.79 -2.38 -0.02 2.22 16 25 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 27 H 0.03 1.50 8.08 -2.39 -0.02 1.48 16 28 H 0.05 2.46 6.55 -2.39 -0.02 2.45 16 29 H 0.37 20.68 7.09 -74.06 -0.52 20.16 16 30 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -58.06 237.37 3.18 -54.88 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.58 Total: 24.79 kcal Atomic # 6 Polarization: -42.85 SS G_CDS: 2.00 Total: -40.85 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.22 Total: -50.47 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -1.66 Total: -33.77 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -58.06 3.18 -54.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229707683.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.197 kcal (2) G-P(sol) polarization free energy of solvation -58.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds