Wall clock time and date at job start Mon Mar 30 2020 02:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47452 * 2 1 4 4 H 1.09004 * 110.05657 * 53.57819 * 3 2 1 5 5 C 1.54373 * 110.07103 * 292.12426 * 3 2 1 6 6 C 1.54888 * 104.21726 * 217.14954 * 5 3 2 7 7 C 1.54891 * 102.74585 * 37.92408 * 6 5 3 8 8 C 1.53869 * 110.03469 * 175.00185 * 3 2 1 9 9 O 1.42903 * 110.03316 * 238.57270 * 8 3 2 10 10 C 1.50702 * 110.03400 * 359.94658 * 8 3 2 11 11 H 1.08010 * 119.99652 * 359.31821 * 10 8 3 12 12 C 1.37875 * 120.00259 * 179.30886 * 10 8 3 13 13 N 1.31509 * 120.00005 * 0.02562 * 12 10 8 14 14 Si 1.86804 * 119.99956 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.46891 * 90.00317 * 14 12 10 16 16 H 1.48499 * 109.47303 * 210.00312 * 14 12 10 17 17 H 1.48499 * 109.47126 * 330.00832 * 14 12 10 18 18 H 1.09000 * 109.47160 * 300.00328 * 1 2 3 19 19 H 1.09003 * 109.46907 * 59.99919 * 1 2 3 20 20 H 1.09000 * 109.47174 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47160 * 239.99672 * 2 1 3 22 22 H 1.09000 * 109.47065 * 120.00569 * 2 1 3 23 23 H 1.09006 * 110.49074 * 98.45463 * 5 3 2 24 24 H 1.09005 * 110.57478 * 335.88130 * 5 3 2 25 25 H 1.08993 * 110.75511 * 279.60930 * 6 5 3 26 26 H 1.09001 * 110.91513 * 156.31297 * 6 5 3 27 27 H 1.09000 * 110.48219 * 203.37359 * 7 6 5 28 28 H 1.08999 * 110.59550 * 80.79409 * 7 6 5 29 29 H 0.96700 * 114.00311 * 180.68912 * 9 8 3 30 30 H 0.97001 * 120.00033 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5916 1.9975 0.8239 5 6 1.7019 2.1239 -1.3432 6 6 2.9310 3.0200 -1.6352 7 6 4.1136 2.1487 -1.1439 8 6 3.5735 1.4593 0.1259 9 8 3.9613 2.1976 1.2864 10 6 4.1000 0.0498 0.2118 11 1 3.4147 -0.7848 0.1916 12 6 5.4564 -0.1743 0.3159 13 7 6.2908 0.8419 0.3409 14 14 6.1090 -1.9214 0.4216 15 1 6.3814 -2.4317 -0.9462 16 1 7.3651 -1.9337 1.2137 17 1 5.0994 -2.7879 1.0811 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5139 -0.8899 22 1 1.8934 -0.5139 0.8899 23 1 0.8015 2.7308 -1.2471 24 1 1.5770 1.3796 -2.1297 25 1 2.8746 3.9495 -1.0689 26 1 3.0189 3.2243 -2.7023 27 1 4.9733 2.7737 -0.9025 28 1 4.3817 1.4068 -1.8961 29 1 4.9180 2.2537 1.4154 30 1 7.2451 0.6842 0.4145 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229707698.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:16 Heat of formation + Delta-G solvation = -89.605397 kcal Electronic energy + Delta-G solvation = -12051.404469 eV Core-core repulsion = 10037.988449 eV Total energy + Delta-G solvation = -2013.416020 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.95973 -35.81229 -34.10939 -33.60916 -29.41826 -28.21271 -25.84407 -23.33909 -21.44664 -20.39658 -18.23447 -16.93387 -16.61650 -15.95231 -15.56584 -15.21253 -14.22679 -13.77142 -13.56170 -13.48128 -13.04643 -12.78922 -12.57700 -12.30027 -12.20184 -11.79426 -11.54732 -11.44493 -11.26055 -11.04872 -10.81246 -10.45078 -9.88352 -8.13322 -6.25395 1.39680 1.41973 1.50936 2.42130 3.10937 3.93142 4.04959 4.08326 4.44745 4.52196 4.63149 4.73027 4.90172 4.95085 5.01368 5.13383 5.16307 5.25351 5.30938 5.36376 5.44001 5.61550 5.66052 5.76866 5.79833 5.94909 6.32374 6.82445 7.45171 7.55501 8.92302 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.039284 B = 0.017375 C = 0.013939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.592674 B = 1611.112185 C = 2008.205569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.076 4.076 4 H 0.050 0.950 5 C -0.104 4.104 6 C -0.124 4.124 7 C -0.113 4.113 8 C 0.228 3.772 9 O -0.606 6.606 10 C -0.556 4.556 11 H 0.078 0.922 12 C 0.019 3.981 13 N -0.921 5.921 14 Si 0.952 3.048 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.270 1.270 18 H 0.050 0.950 19 H 0.063 0.937 20 H 0.060 0.940 21 H 0.054 0.946 22 H 0.044 0.956 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.038 0.962 29 H 0.371 0.629 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 -0.119 -3.190 7.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.135 4.135 3 C -0.095 4.095 4 H 0.069 0.931 5 C -0.142 4.142 6 C -0.162 4.162 7 C -0.152 4.152 8 C 0.189 3.811 9 O -0.415 6.415 10 C -0.594 4.594 11 H 0.096 0.904 12 C -0.180 4.180 13 N -0.563 5.563 14 Si 0.779 3.221 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.195 1.195 18 H 0.069 0.931 19 H 0.082 0.918 20 H 0.079 0.921 21 H 0.073 0.927 22 H 0.063 0.937 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.220 0.780 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.697 -0.026 -3.112 8.303 hybrid contribution 1.651 -0.837 0.187 1.860 sum -6.046 -0.863 -2.925 6.772 Atomic orbital electron populations 1.21830 0.94819 1.01741 1.01870 1.21515 0.95318 0.95661 1.00989 1.21670 0.94290 0.96347 0.97201 0.93115 1.22359 0.97410 0.98213 0.96177 1.22528 0.95592 0.97805 1.00256 1.22660 0.96509 0.97278 0.98748 1.19661 0.90897 0.88653 0.81912 1.86105 1.28720 1.77268 1.49395 1.22576 0.92578 0.94518 1.49718 0.90392 1.25780 0.97445 1.00510 0.94216 1.69794 1.03123 1.31645 1.51718 0.85646 0.77638 0.80844 0.78010 1.20189 1.21196 1.19502 0.93117 0.91796 0.92132 0.92687 0.93692 0.90457 0.91217 0.92544 0.90993 0.94805 0.94309 0.77979 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 9.77 71.98 0.70 -3.53 16 2 C -0.10 -3.75 3.77 30.59 0.12 -3.64 16 3 C -0.08 -3.23 2.74 -10.04 -0.03 -3.26 16 4 H 0.05 2.21 7.96 -2.39 -0.02 2.19 16 5 C -0.10 -3.66 5.54 31.71 0.18 -3.48 16 6 C -0.12 -4.72 6.91 31.89 0.22 -4.50 16 7 C -0.11 -5.46 5.13 31.67 0.16 -5.29 16 8 C 0.23 11.57 0.98 -10.82 -0.01 11.56 16 9 O -0.61 -33.44 12.88 -148.98 -1.92 -35.36 16 10 C -0.56 -30.06 7.22 25.60 0.18 -29.87 16 11 H 0.08 4.08 4.66 -2.91 -0.01 4.07 16 12 C 0.02 1.04 5.24 84.65 0.44 1.48 16 13 N -0.92 -51.48 10.72 21.45 0.23 -51.25 16 14 Si 0.95 43.29 29.54 68.60 2.03 45.32 16 15 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 16 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 18 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 19 H 0.06 1.65 7.51 -2.39 -0.02 1.63 16 20 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.05 2.17 7.32 -2.39 -0.02 2.15 16 22 H 0.04 1.93 6.73 -2.39 -0.02 1.91 16 23 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 24 H 0.07 2.30 7.77 -2.38 -0.02 2.28 16 25 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.03 1.74 7.86 -2.39 -0.02 1.72 16 28 H 0.04 1.95 7.85 -2.39 -0.02 1.93 16 29 H 0.37 21.09 7.14 -74.06 -0.53 20.56 16 30 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -58.36 235.56 2.89 -55.47 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.58 Total: 26.35 kcal Atomic # 6 Polarization: -42.50 SS G_CDS: 1.97 Total: -40.53 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.23 Total: -51.25 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -1.92 Total: -35.36 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -58.36 2.89 -55.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229707698.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.134 kcal (2) G-P(sol) polarization free energy of solvation -58.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds