Wall clock time and date at job start Mon Mar 30 2020 02:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47012 * 2 1 4 4 H 1.09002 * 110.01797 * 305.69973 * 3 2 1 5 5 C 1.54266 * 110.07394 * 67.11902 * 3 2 1 6 6 C 1.54885 * 104.19741 * 142.91608 * 5 3 2 7 7 C 1.54888 * 102.74932 * 322.05670 * 6 5 3 8 8 C 1.53873 * 110.03228 * 184.30983 * 3 2 1 9 9 O 1.42900 * 110.03109 * 359.97438 * 8 3 2 10 10 C 1.50700 * 110.03346 * 121.38062 * 8 3 2 11 11 H 1.08001 * 120.00061 * 0.02562 * 10 8 3 12 12 C 1.37877 * 120.00080 * 179.97438 * 10 8 3 13 13 N 1.31514 * 120.00048 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00108 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46812 * 0.02562 * 14 12 10 16 16 H 1.48493 * 109.46808 * 120.00198 * 14 12 10 17 17 H 1.48496 * 109.47113 * 240.00361 * 14 12 10 18 18 H 1.08997 * 109.46844 * 299.99841 * 1 2 3 19 19 H 1.09005 * 109.46742 * 60.00053 * 1 2 3 20 20 H 1.09000 * 109.47084 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47255 * 240.00356 * 2 1 3 22 22 H 1.08994 * 109.47219 * 119.99928 * 2 1 3 23 23 H 1.08997 * 110.48660 * 261.59676 * 5 3 2 24 24 H 1.09009 * 110.48346 * 24.23482 * 5 3 2 25 25 H 1.09003 * 110.75826 * 203.74253 * 6 5 3 26 26 H 1.08999 * 110.91367 * 80.44636 * 6 5 3 27 27 H 1.08998 * 110.48749 * 279.26537 * 7 6 5 28 28 H 1.09000 * 110.60155 * 156.67434 * 7 6 5 29 29 H 0.96701 * 114.00137 * 179.97438 * 9 8 3 30 30 H 0.96996 * 120.00131 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6009 1.9935 -0.8317 5 6 1.6854 2.1295 1.3349 6 6 2.9102 3.0281 1.6369 7 6 4.0993 2.1554 1.1641 8 6 3.5748 1.4590 -0.1086 9 8 4.0750 0.1222 -0.1772 10 6 3.9976 2.2318 -1.3314 11 1 3.2517 2.6733 -1.9758 12 6 5.3365 2.3761 -1.6270 13 7 6.2448 1.8389 -0.8421 14 14 5.8605 3.3334 -3.1431 15 1 4.6561 3.8326 -3.8539 16 1 6.7059 4.4837 -2.7343 17 1 6.6360 2.4452 -4.0457 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 0.7858 2.7351 1.2251 24 1 1.5531 1.3875 2.1225 25 1 2.9836 3.2353 2.7046 26 1 2.8617 3.9562 1.0674 27 1 4.3569 1.4177 1.9240 28 1 4.9628 2.7780 0.9300 29 1 5.0379 0.0656 -0.2474 30 1 7.1868 1.9401 -1.0502 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229707707.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:19 Heat of formation + Delta-G solvation = -79.297049 kcal Electronic energy + Delta-G solvation = -12007.782159 eV Core-core repulsion = 9994.813142 eV Total energy + Delta-G solvation = -2012.969017 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.07434 -33.86961 -32.29811 -31.76308 -27.28686 -26.57372 -24.24954 -21.54676 -19.72584 -18.25891 -16.80086 -14.98220 -14.65395 -14.15028 -13.63608 -13.38568 -12.69308 -12.24825 -11.68657 -11.59682 -11.35956 -11.12369 -10.72257 -10.61239 -10.33030 -10.24055 -9.90088 -9.81852 -9.50801 -9.42000 -8.83281 -8.45754 -7.91711 -6.10934 -4.19267 3.25127 3.33731 3.38114 4.37127 5.14749 5.64016 5.67731 5.73134 5.93092 5.99807 6.09167 6.32130 6.48998 6.51623 6.53107 6.68778 6.71492 6.83400 6.86988 7.12557 7.24877 7.28292 7.43907 7.64887 7.75072 7.96669 8.33377 8.84393 9.49219 9.69437 10.94262 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.047258 B = 0.014589 C = 0.013666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.345882 B = 1918.810990 C = 2048.339720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.076 4.076 4 H 0.064 0.936 5 C -0.115 4.115 6 C -0.121 4.121 7 C -0.129 4.129 8 C 0.252 3.748 9 O -0.590 6.590 10 C -0.526 4.526 11 H 0.058 0.942 12 C 0.065 3.935 13 N -0.898 5.898 14 Si 0.895 3.105 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 H 0.046 0.954 19 H 0.046 0.954 20 H 0.042 0.958 21 H 0.064 0.936 22 H 0.055 0.945 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.377 0.623 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.614 0.010 2.499 6.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.135 4.135 3 C -0.095 4.095 4 H 0.083 0.917 5 C -0.153 4.153 6 C -0.159 4.159 7 C -0.167 4.167 8 C 0.212 3.788 9 O -0.399 6.399 10 C -0.564 4.564 11 H 0.076 0.924 12 C -0.135 4.135 13 N -0.539 5.539 14 Si 0.723 3.277 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.209 1.209 18 H 0.065 0.935 19 H 0.065 0.935 20 H 0.061 0.939 21 H 0.083 0.917 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.227 0.773 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.066 -0.152 2.550 6.582 hybrid contribution 1.038 0.779 -0.854 1.554 sum -5.028 0.627 1.695 5.343 Atomic orbital electron populations 1.21881 0.98002 1.00148 1.00893 1.21233 0.92619 0.97375 1.02305 1.21824 0.96845 0.94841 0.95982 0.91719 1.22394 0.97124 0.98087 0.97698 1.22382 0.96446 0.98628 0.98455 1.22892 0.97584 0.98481 0.97783 1.19218 0.87660 0.80186 0.91727 1.86127 1.27672 1.29313 1.96803 1.21895 0.91979 1.33028 1.09492 0.92367 1.25019 0.96621 0.95298 0.96601 1.69654 1.01076 1.45659 1.37529 0.86491 0.78579 0.79651 0.82990 1.19765 1.21007 1.20938 0.93465 0.93471 0.93920 0.91738 0.92626 0.93379 0.92736 0.93777 0.92152 0.94465 0.90510 0.77256 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.76 37.16 0.36 -2.08 16 2 C -0.10 -1.95 4.33 -26.73 -0.12 -2.06 16 3 C -0.08 -1.67 2.58 -89.50 -0.23 -1.90 16 4 H 0.06 1.45 7.37 -51.93 -0.38 1.06 16 5 C -0.12 -2.21 5.50 -25.07 -0.14 -2.35 16 6 C -0.12 -2.47 6.91 -24.74 -0.17 -2.64 16 7 C -0.13 -3.10 5.65 -25.07 -0.14 -3.24 16 8 C 0.25 6.35 0.95 -90.65 -0.09 6.26 16 9 O -0.59 -15.55 11.10 -35.23 -0.39 -15.94 16 10 C -0.53 -14.38 8.21 -34.44 -0.28 -14.66 16 11 H 0.06 1.60 7.33 -52.49 -0.38 1.21 16 12 C 0.07 1.77 4.99 -17.82 -0.09 1.68 16 13 N -0.90 -24.52 10.26 55.43 0.57 -23.95 16 14 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H 0.05 0.70 7.49 -51.93 -0.39 0.32 16 19 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.06 1.39 7.68 -51.93 -0.40 0.99 16 22 H 0.05 1.13 7.91 -51.93 -0.41 0.72 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.99 7.78 -51.92 -0.40 0.59 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 28 H 0.08 2.02 6.54 -51.93 -0.34 1.68 16 29 H 0.38 10.25 7.09 45.56 0.32 10.57 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 237.37 15.07 3.58 3.58 Total: -1.00 -27.28 237.37 -6.21 -33.49 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.05 Total: 7.74 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -0.89 Total: -20.98 kcal Atomic # 7 Polarization: -24.52 SS G_CDS: 0.57 Total: -23.95 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.39 Total: -15.94 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.28 -6.21 -33.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229707707.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.803 kcal (2) G-P(sol) polarization free energy of solvation -27.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds