Wall clock time and date at job start Mon Mar 30 2020 02:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47012 * 2 1 4 4 H 1.09002 * 110.01797 * 305.69973 * 3 2 1 5 5 C 1.54266 * 110.07394 * 67.11902 * 3 2 1 6 6 C 1.54885 * 104.19741 * 142.91608 * 5 3 2 7 7 C 1.54888 * 102.74932 * 322.05670 * 6 5 3 8 8 C 1.53873 * 110.03228 * 184.30983 * 3 2 1 9 9 O 1.42900 * 110.03109 * 359.97438 * 8 3 2 10 10 C 1.50700 * 110.03346 * 121.38062 * 8 3 2 11 11 H 1.08001 * 120.00061 * 0.02562 * 10 8 3 12 12 C 1.37877 * 120.00080 * 179.97438 * 10 8 3 13 13 N 1.31514 * 120.00048 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00108 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46812 * 0.02562 * 14 12 10 16 16 H 1.48493 * 109.46808 * 120.00198 * 14 12 10 17 17 H 1.48496 * 109.47113 * 240.00361 * 14 12 10 18 18 H 1.08997 * 109.46844 * 299.99841 * 1 2 3 19 19 H 1.09005 * 109.46742 * 60.00053 * 1 2 3 20 20 H 1.09000 * 109.47084 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47255 * 240.00356 * 2 1 3 22 22 H 1.08994 * 109.47219 * 119.99928 * 2 1 3 23 23 H 1.08997 * 110.48660 * 261.59676 * 5 3 2 24 24 H 1.09009 * 110.48346 * 24.23482 * 5 3 2 25 25 H 1.09003 * 110.75826 * 203.74253 * 6 5 3 26 26 H 1.08999 * 110.91367 * 80.44636 * 6 5 3 27 27 H 1.08998 * 110.48749 * 279.26537 * 7 6 5 28 28 H 1.09000 * 110.60155 * 156.67434 * 7 6 5 29 29 H 0.96701 * 114.00137 * 179.97438 * 9 8 3 30 30 H 0.96996 * 120.00131 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6009 1.9935 -0.8317 5 6 1.6854 2.1295 1.3349 6 6 2.9102 3.0281 1.6369 7 6 4.0993 2.1554 1.1641 8 6 3.5748 1.4590 -0.1086 9 8 4.0750 0.1222 -0.1772 10 6 3.9976 2.2318 -1.3314 11 1 3.2517 2.6733 -1.9758 12 6 5.3365 2.3761 -1.6270 13 7 6.2448 1.8389 -0.8421 14 14 5.8605 3.3334 -3.1431 15 1 4.6561 3.8326 -3.8539 16 1 6.7059 4.4837 -2.7343 17 1 6.6360 2.4452 -4.0457 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 0.7858 2.7351 1.2251 24 1 1.5531 1.3875 2.1225 25 1 2.9836 3.2353 2.7046 26 1 2.8617 3.9562 1.0674 27 1 4.3569 1.4177 1.9240 28 1 4.9628 2.7780 0.9300 29 1 5.0379 0.0656 -0.2474 30 1 7.1868 1.9401 -1.0502 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229707707.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:18 Heat of formation + Delta-G solvation = -96.157323 kcal Electronic energy + Delta-G solvation = -12008.513276 eV Core-core repulsion = 9994.813142 eV Total energy + Delta-G solvation = -2013.700133 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.88023 -35.74843 -34.22089 -33.52408 -29.20251 -28.19913 -26.14066 -23.13647 -21.49472 -20.05859 -18.82476 -17.02798 -16.45687 -15.86205 -15.27994 -15.12141 -14.52610 -13.86094 -13.48198 -13.19556 -13.15830 -12.93349 -12.51324 -12.34379 -12.25943 -11.89573 -11.63628 -11.55925 -11.17672 -11.08614 -10.74831 -10.47441 -9.94657 -8.16781 -6.32861 1.37063 1.40253 1.50717 2.39234 3.06439 4.02434 4.06080 4.08353 4.39978 4.51745 4.60695 4.64816 4.88770 4.95284 5.00244 5.10387 5.16886 5.25205 5.31231 5.38603 5.53830 5.58191 5.62760 5.75740 5.79819 6.00018 6.29910 6.75284 7.38797 7.57265 8.86667 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.047258 B = 0.014589 C = 0.013666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.345882 B = 1918.810990 C = 2048.339720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.080 4.080 4 H 0.054 0.946 5 C -0.105 4.105 6 C -0.116 4.116 7 C -0.127 4.127 8 C 0.233 3.767 9 O -0.596 6.596 10 C -0.550 4.550 11 H 0.048 0.952 12 C 0.024 3.976 13 N -0.915 5.915 14 Si 0.954 3.046 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.280 1.280 18 H 0.064 0.936 19 H 0.050 0.950 20 H 0.060 0.940 21 H 0.036 0.964 22 H 0.048 0.952 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.031 0.969 28 H 0.045 0.955 29 H 0.368 0.632 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.937 0.544 2.865 7.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 C -0.098 4.098 4 H 0.073 0.927 5 C -0.143 4.143 6 C -0.154 4.154 7 C -0.165 4.165 8 C 0.194 3.806 9 O -0.404 6.404 10 C -0.588 4.588 11 H 0.067 0.933 12 C -0.176 4.176 13 N -0.556 5.556 14 Si 0.780 3.220 15 H -0.196 1.196 16 H -0.204 1.204 17 H -0.206 1.206 18 H 0.083 0.917 19 H 0.069 0.931 20 H 0.079 0.921 21 H 0.055 0.945 22 H 0.067 0.933 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.217 0.783 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.402 0.382 2.922 7.967 hybrid contribution 1.492 0.589 -0.975 1.877 sum -5.910 0.972 1.948 6.298 Atomic orbital electron populations 1.21792 0.94525 1.01768 1.01931 1.21148 0.95613 0.95689 1.00609 1.21824 0.94270 0.96294 0.97432 0.92720 1.22354 0.97556 0.98185 0.96180 1.22355 0.95115 0.97883 1.00004 1.22758 0.98093 0.98423 0.97258 1.19555 0.90126 0.79360 0.91586 1.86136 1.26903 1.30492 1.96874 1.22148 0.92261 1.33884 1.10512 0.93327 1.25703 0.96654 0.96097 0.99112 1.69743 1.01249 1.46033 1.38551 0.85566 0.78096 0.78483 0.79807 1.19606 1.20390 1.20631 0.91725 0.93081 0.92103 0.94468 0.93337 0.90469 0.91360 0.91011 0.92534 0.95024 0.93571 0.78276 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 9.76 71.98 0.70 -3.47 16 2 C -0.09 -3.60 4.33 30.60 0.13 -3.47 16 3 C -0.08 -3.39 2.58 -10.07 -0.03 -3.41 16 4 H 0.05 2.40 7.37 -2.39 -0.02 2.39 16 5 C -0.11 -3.72 5.50 31.67 0.17 -3.55 16 6 C -0.12 -4.48 6.91 31.88 0.22 -4.26 16 7 C -0.13 -6.10 5.65 31.67 0.18 -5.92 16 8 C 0.23 11.84 0.95 -10.81 -0.01 11.83 16 9 O -0.60 -32.10 11.10 -148.98 -1.65 -33.75 16 10 C -0.55 -30.47 8.21 25.60 0.21 -30.26 16 11 H 0.05 2.71 7.33 -2.91 -0.02 2.69 16 12 C 0.02 1.28 4.99 84.65 0.42 1.71 16 13 N -0.91 -50.70 10.26 21.45 0.22 -50.48 16 14 Si 0.95 43.44 29.54 68.60 2.03 45.46 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H 0.06 1.67 7.49 -2.39 -0.02 1.65 16 19 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 20 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.04 1.60 7.68 -2.39 -0.02 1.59 16 22 H 0.05 1.92 7.91 -2.39 -0.02 1.90 16 23 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.07 2.24 7.78 -2.38 -0.02 2.22 16 25 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.03 1.50 8.08 -2.39 -0.02 1.48 16 28 H 0.05 2.46 6.54 -2.39 -0.02 2.45 16 29 H 0.37 20.68 7.09 -74.06 -0.52 20.15 16 30 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -58.14 237.37 3.18 -54.96 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.58 Total: 24.61 kcal Atomic # 6 Polarization: -42.80 SS G_CDS: 2.01 Total: -40.80 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.22 Total: -50.48 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -1.65 Total: -33.75 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -58.14 3.18 -54.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229707707.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.200 kcal (2) G-P(sol) polarization free energy of solvation -58.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds