Wall clock time and date at job start Mon Mar 30 2020 02:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42907 * 109.46821 * 2 1 4 4 C 1.50695 * 109.47141 * 119.99701 * 2 1 3 5 5 H 1.08000 * 120.00099 * 120.00229 * 4 2 1 6 6 C 1.37875 * 120.00243 * 300.00256 * 4 2 1 7 7 N 1.31513 * 120.00375 * 179.97438 * 6 4 2 8 8 Si 1.86805 * 119.99998 * 359.97438 * 6 4 2 9 9 H 1.48494 * 109.47428 * 89.99847 * 8 6 4 10 10 H 1.48500 * 109.47227 * 209.99986 * 8 6 4 11 11 H 1.48505 * 109.46826 * 329.99923 * 8 6 4 12 12 C 1.52995 * 109.47327 * 240.00192 * 2 1 3 13 13 C 1.52999 * 109.47311 * 59.99709 * 12 2 1 14 14 C 1.53786 * 113.61361 * 184.99986 * 13 12 2 15 15 C 1.53781 * 87.17350 * 220.06273 * 14 13 12 16 16 C 1.53782 * 87.08260 * 25.39213 * 15 14 13 17 17 H 1.08996 * 109.47007 * 179.97438 * 1 2 3 18 18 H 1.08997 * 109.47604 * 300.00394 * 1 2 3 19 19 H 1.09008 * 109.46934 * 60.00074 * 1 2 3 20 20 H 0.96706 * 113.99459 * 179.97438 * 3 2 1 21 21 H 0.96994 * 120.00455 * 180.02562 * 7 6 4 22 22 H 1.09002 * 109.47287 * 299.99577 * 12 2 1 23 23 H 1.09004 * 109.47100 * 179.97438 * 12 2 1 24 24 H 1.08993 * 112.90825 * 316.25187 * 13 12 2 25 25 H 1.09002 * 113.61357 * 105.47190 * 14 13 12 26 26 H 1.09002 * 113.61608 * 334.65352 * 14 13 12 27 27 H 1.09001 * 113.61695 * 139.93969 * 15 14 13 28 28 H 1.08997 * 113.61223 * 270.84552 * 15 14 13 29 29 H 1.08997 * 113.61668 * 89.11298 * 16 15 14 30 30 H 1.08998 * 113.61674 * 219.93807 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1371 -0.8595 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8747 2.6992 10 1 0.9770 1.9955 3.9070 11 1 0.8491 2.1774 1.4922 12 6 2.0400 -0.7212 -1.2492 13 6 1.5300 0.0000 -2.4985 14 6 1.8862 -0.7163 -3.8119 15 6 2.1666 0.6743 -4.4055 16 6 2.4459 1.1449 -2.9683 17 1 -0.3633 -1.0276 -0.0005 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8901 20 1 2.9703 1.4237 0.0004 21 1 1.9025 -0.5283 4.4375 22 1 1.6768 -1.7489 -1.2492 23 1 3.1300 -0.7208 -1.2494 24 1 0.4798 0.2827 -2.4262 25 1 1.0410 -1.2261 -4.2743 26 1 2.7724 -1.3467 -3.7390 27 1 3.0431 0.7042 -5.0527 28 1 1.2907 1.1417 -4.8554 29 1 3.4853 1.0238 -2.6634 30 1 2.0538 2.1382 -2.7501 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229766844.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:27 Heat of formation + Delta-G solvation = -35.640466 kcal Electronic energy + Delta-G solvation = -11845.793357 eV Core-core repulsion = 9834.717432 eV Total energy + Delta-G solvation = -2011.075925 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.78454 -36.25089 -32.25385 -30.95041 -27.56974 -25.24823 -25.18783 -22.78526 -19.37669 -18.87643 -17.11593 -15.42893 -14.94030 -14.41989 -14.01857 -13.66147 -12.89776 -12.27485 -12.12386 -12.06924 -11.65896 -11.41012 -11.37116 -10.69610 -10.52133 -10.22727 -10.04526 -9.78071 -9.65961 -9.50845 -8.75425 -8.54238 -8.00005 -6.07546 -4.17004 3.40671 3.53078 3.77448 4.56496 5.01785 5.05548 5.13709 5.25681 5.31988 5.72446 5.88650 5.95931 6.09603 6.10249 6.20778 6.28216 6.33905 6.44193 6.54988 6.69673 6.76779 6.84745 7.00183 7.11805 7.51514 7.73025 8.36863 8.89551 9.12964 9.58965 11.03527 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.068998 B = 0.012720 C = 0.012058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.711851 B = 2200.807271 C = 2321.647643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.216 3.784 3 O -0.576 6.576 4 C -0.553 4.553 5 H 0.071 0.929 6 C 0.081 3.919 7 N -0.897 5.897 8 Si 0.883 3.117 9 H -0.292 1.292 10 H -0.308 1.308 11 H -0.217 1.217 12 C -0.115 4.115 13 C -0.104 4.104 14 C -0.142 4.142 15 C -0.147 4.147 16 C -0.125 4.125 17 H 0.059 0.941 18 H 0.044 0.956 19 H 0.037 0.963 20 H 0.356 0.644 21 H 0.263 0.737 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.986 2.950 -11.804 12.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.177 3.823 3 O -0.382 6.382 4 C -0.590 4.590 5 H 0.089 0.911 6 C -0.123 4.123 7 N -0.534 5.534 8 Si 0.713 3.287 9 H -0.220 1.220 10 H -0.237 1.237 11 H -0.140 1.140 12 C -0.153 4.153 13 C -0.122 4.122 14 C -0.180 4.180 15 C -0.185 4.185 16 C -0.163 4.163 17 H 0.078 0.922 18 H 0.062 0.938 19 H 0.056 0.944 20 H 0.202 0.798 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.105 0.895 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.620 3.064 -11.641 12.146 hybrid contribution 0.011 0.372 0.389 0.538 sum -1.608 3.436 -11.253 11.875 Atomic orbital electron populations 1.21987 0.96875 1.00677 0.99434 1.19055 0.90742 0.80172 0.92370 1.86577 1.24872 1.29727 1.96990 1.21501 1.33722 1.14187 0.89629 0.91090 1.25034 0.94923 0.96769 0.95571 1.69957 1.44926 1.40430 0.98082 0.87064 0.79013 0.84855 0.77801 1.21992 1.23708 1.14020 1.22051 0.99869 0.99132 0.94280 1.22597 0.99750 0.96074 0.93766 1.22990 1.01053 0.96135 0.97806 1.22849 1.00823 0.97645 0.97150 1.22872 0.99888 0.98984 0.94542 0.92214 0.93787 0.94367 0.79841 0.92727 0.92248 0.92696 0.89528 0.92386 0.90597 0.92325 0.90908 0.90668 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 2 C 0.22 4.97 0.64 -91.78 -0.06 4.91 16 3 O -0.58 -12.91 8.79 -35.23 -0.31 -13.22 16 4 C -0.55 -15.43 8.82 -34.44 -0.30 -15.73 16 5 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 6 C 0.08 2.35 5.45 -17.82 -0.10 2.25 16 7 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 8 Si 0.88 22.68 23.91 -169.99 -4.06 18.62 16 9 H -0.29 -7.44 6.87 56.52 0.39 -7.05 16 10 H -0.31 -8.05 7.11 56.52 0.40 -7.65 16 11 H -0.22 -5.42 5.30 56.52 0.30 -5.12 16 12 C -0.12 -2.26 4.26 -26.73 -0.11 -2.37 16 13 C -0.10 -1.71 3.32 -89.71 -0.30 -2.01 16 14 C -0.14 -1.98 7.64 -25.92 -0.20 -2.18 16 15 C -0.15 -1.90 8.08 -25.92 -0.21 -2.11 16 16 C -0.13 -1.88 6.89 -25.82 -0.18 -2.06 16 17 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 18 H 0.04 1.04 3.27 -51.93 -0.17 0.87 16 19 H 0.04 0.75 6.18 -51.92 -0.32 0.43 16 20 H 0.36 7.19 9.04 45.56 0.41 7.61 16 21 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 22 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 23 H 0.05 1.07 7.84 -51.93 -0.41 0.66 16 24 H 0.09 1.48 6.02 -51.93 -0.31 1.17 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 1.12 7.90 -51.93 -0.41 0.71 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 232.61 15.07 3.51 3.51 Total: -1.00 -30.42 232.61 -5.09 -35.51 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -3.84 Total: 4.55 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -1.16 Total: -21.95 kcal Atomic # 7 Polarization: -27.78 SS G_CDS: 0.77 Total: -27.00 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.31 Total: -13.22 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.06 Total: 18.62 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -30.42 -5.09 -35.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229766844.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.133 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds