Wall clock time and date at job start Mon Mar 30 2020 02:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42897 * 109.47248 * 2 1 4 4 C 1.50703 * 109.46975 * 240.00375 * 2 1 3 5 5 H 1.08005 * 119.99802 * 244.25500 * 4 2 1 6 6 C 1.37877 * 120.00448 * 64.24604 * 4 2 1 7 7 N 1.31515 * 119.99597 * 5.64096 * 6 4 2 8 8 Si 1.86792 * 120.00423 * 185.63839 * 6 4 2 9 9 H 1.48501 * 109.47062 * 60.00029 * 8 6 4 10 10 H 1.48506 * 109.47256 * 300.00382 * 8 6 4 11 11 H 1.48494 * 109.47284 * 179.97438 * 8 6 4 12 12 C 1.52995 * 109.47332 * 120.00127 * 2 1 3 13 13 C 1.52997 * 109.47231 * 304.99958 * 12 2 1 14 14 C 1.53784 * 113.61202 * 272.49770 * 13 12 2 15 15 C 1.53783 * 87.07915 * 220.01711 * 14 13 12 16 16 C 1.53783 * 113.61404 * 175.00056 * 13 12 2 17 17 H 1.08994 * 109.47260 * 186.56810 * 1 2 3 18 18 H 1.09007 * 109.46776 * 306.56542 * 1 2 3 19 19 H 1.08999 * 109.47583 * 66.55864 * 1 2 3 20 20 H 0.96703 * 114.00417 * 180.02562 * 3 2 1 21 21 H 0.97001 * 120.00354 * 3.30497 * 7 6 4 22 22 H 1.09001 * 109.46954 * 65.00050 * 12 2 1 23 23 H 1.09007 * 109.47509 * 184.99788 * 12 2 1 24 24 H 1.09000 * 112.85184 * 43.79972 * 13 12 2 25 25 H 1.08999 * 113.61335 * 334.55992 * 14 13 12 26 26 H 1.08999 * 113.61573 * 105.47056 * 14 13 12 27 27 H 1.09000 * 113.61473 * 270.88365 * 15 14 13 28 28 H 1.08999 * 113.61505 * 139.97739 * 15 14 13 29 29 H 1.09004 * 113.61029 * 254.52368 * 16 13 12 30 30 H 1.08993 * 113.61535 * 25.34692 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5953 -1.6268 -1.1330 6 6 1.7729 -0.1904 -2.4809 7 7 1.1850 0.9802 -2.5972 8 14 2.2567 -1.1486 -4.0097 9 1 1.5582 -2.4591 -4.0142 10 1 3.7251 -1.3704 -4.0108 11 1 1.8709 -0.3785 -5.2193 12 6 2.0400 -0.7212 1.2492 13 6 1.4300 -0.0763 2.4953 14 6 2.2412 1.1147 3.0323 15 6 1.9380 0.5838 4.4433 16 6 1.7838 -0.8055 3.8022 17 1 -0.3633 -1.0209 0.1175 18 1 -0.3633 0.6123 0.8255 19 1 -0.3634 0.4088 -0.9428 20 1 2.9703 1.4236 -0.0004 21 1 0.9771 1.4995 -1.8047 22 1 1.7516 -1.7715 1.2055 23 1 3.1264 -0.6444 1.2951 24 1 0.3658 0.1324 2.3860 25 1 3.2984 1.0769 2.7694 26 1 1.7863 2.0828 2.8229 27 1 1.0129 0.9742 4.8673 28 1 2.7828 0.6571 5.1283 29 1 0.9594 -1.3874 4.2144 30 1 2.7150 -1.3693 3.7493 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229766851.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:29 Heat of formation + Delta-G solvation = -50.800016 kcal Electronic energy + Delta-G solvation = -11815.954242 eV Core-core repulsion = 9804.220949 eV Total energy + Delta-G solvation = -2011.733293 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.73879 -36.22485 -32.05552 -30.67643 -26.91456 -25.16492 -25.08033 -22.54127 -19.57685 -18.77011 -17.19496 -15.56915 -14.74765 -14.05623 -13.70046 -13.51692 -12.97396 -12.24410 -12.05468 -11.71663 -11.45572 -11.03497 -10.91848 -10.63591 -10.51004 -10.11424 -9.99491 -9.96447 -9.86967 -9.51947 -8.97423 -8.35881 -7.80001 -6.16846 -4.06404 3.45643 3.47017 3.66132 4.57794 5.04862 5.09001 5.16808 5.34712 5.42356 5.86564 5.91111 6.01262 6.11185 6.13532 6.32462 6.37129 6.44026 6.54921 6.71597 6.75642 6.87498 7.01495 7.09118 7.34790 7.74804 8.16667 8.46420 9.00744 9.23956 9.79490 11.17959 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.077396 B = 0.011072 C = 0.010679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.687077 B = 2528.250331 C = 2621.295370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.234 3.766 3 O -0.576 6.576 4 C -0.643 4.643 5 H 0.046 0.954 6 C 0.036 3.964 7 N -0.899 5.899 8 Si 1.059 2.941 9 H -0.289 1.289 10 H -0.290 1.290 11 H -0.283 1.283 12 C -0.118 4.118 13 C -0.104 4.104 14 C -0.124 4.124 15 C -0.146 4.146 16 C -0.143 4.143 17 H 0.044 0.956 18 H 0.027 0.973 19 H 0.061 0.939 20 H 0.353 0.647 21 H 0.294 0.706 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.366 -1.855 9.044 9.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.195 3.805 3 O -0.380 6.380 4 C -0.680 4.680 5 H 0.064 0.936 6 C -0.173 4.173 7 N -0.536 5.536 8 Si 0.888 3.112 9 H -0.216 1.216 10 H -0.216 1.216 11 H -0.209 1.209 12 C -0.156 4.156 13 C -0.122 4.122 14 C -0.162 4.162 15 C -0.184 4.184 16 C -0.181 4.181 17 H 0.063 0.937 18 H 0.046 0.954 19 H 0.080 0.920 20 H 0.198 0.802 21 H 0.108 0.892 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.105 0.895 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.638 -1.687 7.410 7.627 hybrid contribution 0.705 -0.370 1.663 1.844 sum 1.343 -2.057 9.073 9.400 Atomic orbital electron populations 1.21730 0.96945 0.99151 1.00575 1.18863 0.90881 0.79684 0.91041 1.86359 1.24392 1.30188 1.97050 1.22393 1.40928 1.11830 0.92900 0.93608 1.25639 0.94047 0.96774 1.00814 1.70599 1.36102 1.10843 1.36018 0.83726 0.76073 0.75288 0.76111 1.21603 1.21623 1.20864 1.22138 0.98977 0.99402 0.95094 1.22584 1.00102 0.95825 0.93665 1.22817 1.00144 0.98662 0.94544 1.22850 1.00902 0.97557 0.97077 1.22997 1.01093 0.96068 0.97906 0.93663 0.95430 0.92024 0.80247 0.89152 0.92728 0.93308 0.89487 0.90802 0.91756 0.90864 0.92353 0.92417 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 7.92 37.15 0.29 -2.77 16 2 C 0.23 5.78 0.65 -91.78 -0.06 5.73 16 3 O -0.58 -14.30 10.15 -35.23 -0.36 -14.66 16 4 C -0.64 -17.93 8.18 -34.44 -0.28 -18.21 16 5 H 0.05 1.28 7.75 -52.48 -0.41 0.87 16 6 C 0.04 1.03 5.16 -17.82 -0.09 0.94 16 7 N -0.90 -27.22 12.72 55.43 0.71 -26.51 16 8 Si 1.06 25.24 29.91 -169.99 -5.08 20.16 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C -0.12 -2.47 4.28 -26.74 -0.11 -2.59 16 13 C -0.10 -1.85 3.32 -89.81 -0.30 -2.15 16 14 C -0.12 -2.03 7.00 -25.92 -0.18 -2.21 16 15 C -0.15 -2.03 8.08 -25.92 -0.21 -2.24 16 16 C -0.14 -2.14 7.64 -25.92 -0.20 -2.33 16 17 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 18 H 0.03 0.60 6.43 -51.93 -0.33 0.27 16 19 H 0.06 1.65 6.11 -51.93 -0.32 1.33 16 20 H 0.35 8.10 9.04 45.56 0.41 8.52 16 21 H 0.29 8.97 4.99 -40.82 -0.20 8.76 16 22 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.05 1.01 7.84 -51.93 -0.41 0.60 16 24 H 0.09 1.63 5.97 -51.93 -0.31 1.32 16 25 H 0.07 1.19 7.90 -51.93 -0.41 0.78 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 239.31 15.07 3.61 3.61 Total: -1.00 -29.75 239.31 -6.00 -35.75 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -3.73 Total: 7.48 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: -1.14 Total: -25.82 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.71 Total: -26.51 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.36 Total: -14.66 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.08 Total: 20.16 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.75 -6.00 -35.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229766851.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.053 kcal (2) G-P(sol) polarization free energy of solvation -29.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds